FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  354 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR----VGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            D++ DG +   EL+ + IR  +   + EE  +M+ + D +G+G+I L+  ++     +G          +LKE F+ +D D +G+I+A+EL  V   LG E C++ DC+ MI+ VD  G G
Sbjct:   26 DKNGDGKISVDELKEV-IRALSPTASPEETVTMMKQFDLDGNGFIDLDEFVALFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLG-EKCSVQDCKKMISKVDIDGDG 144          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 3
Query:  303 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            +++ D   E+ +A  L D D  G +   EL+  +  LG +P  +EE+K M+SEVD+E  G I     ++ +     E   + E+ + F  FD D  GKI+ + L  V  +LG+ L T ++ + MI   D+ G G
Sbjct:   24 ELTEDQKQEVREAFDLFDSDGSGTIDVKELKVAMRALGFEP-RKEEMKKMISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESL-TDEELQEMIDEADRDGDG 155          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM2_BRAFL (Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 43/137 (31.39%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D +G +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T  G++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGNGNITTKELGTVMRSLGQNP-TEGELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDKDGNGFISAAELRHVMTNPGEKL-TDEEVDEMIREADIDGDG 135          
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CML24_ARATH8.621e-1133.06Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CETN1_MOUSE8.621e-1132.09Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
CALM2_BRAFL8.621e-1131.39Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
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