FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+ +++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MAZZLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E+KE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKL-TDNEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-TDEEVEEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML16_ORYSJ (Probable calcium-binding protein CML16 OS=Oryza sativa subsp. japonica GN=CML16 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQE----EVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E+ +     D D DG +  SEL A+  R  A PP++     EV +M++E+D + DG++ L    +  G    +   E EL+  FD +D D DG+ITA EL  V  ++G E C+ ++C  MIA VD  G G
Sbjct:   27 EIERVFTRFDADGDGRISPSELAAVT-RAIAPPPSESAGGREVAAMMNELDTDRDGFVDLGEFAAFHGRGRGDAEHEAELRAAFDVYDVDGDGRITAAELGKVLGRIG-EGCSAEECERMIASVDVDGDG 154          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD++G G I     ++ +     +   E E+KE F  FD D +G I+A EL  + T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLSNEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD++G G I     ++ +     +   E E+KE F  FD D +G I+A EL  + T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLSNEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ D   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEPLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P +Q E++ M++EVD +G+G I     ++ +     +   E E+KE F  FD D +G I+A EL  V T LG++L T  +   MI   D  G G
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-SQAELEDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKL-TDSEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM6_ARATH (Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ D   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L   ++   MI   D  G G
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLSD-EEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS-----------RVGNSSC-EPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            EL Q  +  D + DG +   EL ++L  LGA P    EV+ M+ E+D + DG++ L    +           + G++   E A E EL+E F  +DAD +GKI+A EL  V  +LGD+ C++ DC  MI  VD  G G
Sbjct:    5 ELEQVFRRYDANGDGKISAEELASVLRALGA-PLGPGEVRRMMDEMDSDRDGFVDLSEFAAFHCGPTPAHGGKGGDAKDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDK-CSVADCSRMIRSVDADGDG 140          
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CALM_SPIOL2.424e-1334.31Calmodulin OS=Spinacia oleracea PE=1 SV=2[more]
CALM_PLECO2.424e-1334.31Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S... [more]
CALM1_ARATH2.424e-1336.51Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CML16_ORYSJ3.166e-1336.92Probable calcium-binding protein CML16 OS=Oryza sa... [more]
CALM_TRYBG3.166e-1333.58Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV... [more]
CALM_TRYBB3.166e-1333.58Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2[more]
CALM_MALDO3.166e-1335.04Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2[more]
CALM_AGABI3.166e-1334.31Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CALM6_ARATH3.166e-1334.31Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 ... [more]
CML18_ORYSJ4.135e-1336.96Probable calcium-binding protein CML18 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
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