FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  303 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            +++ +   E  +A  L D+D DG +   EL A +IR     PT++E++ M++E+D +G+G I     ++ + N   E   + ELKE F  FD D +G I+A EL  V   LG++L T ++   MI   D  G G
Sbjct:   27 ELTQEQIMEFKEAFCLFDKDGDGCITADEL-ATVIRSLDQNPTEQELQDMITEIDSDGNGTIEFSEFLNLMANQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKL-TDEEVDQMIKEADLDGDG 158          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     E   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADTDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +GDG I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E+KE F  FD D +G I+A EL  V T LG++L T  +   MI   D  G G
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEGELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKL-TDTEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E ELKE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALL3_HUMAN (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 43/137 (31.39%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M+SE+DR+G+G +     +  +     +   E E++E F  FD D +G ++A EL  V T+LG++L   ++   MI   D  G G
Sbjct:    1 MADQLTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNP-TEAELRDMMSEIDRDGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSD-EEVDEMIRAADTDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 44/126 (34.92%), Postives = 63/126 (50.00%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG  P T+ E+K M+ EVD +G G I  E  +  +     +   E +++E F  FD D +G IT +EL  V   LGD L   D+   M+   D  G G
Sbjct:   11 EFREAFNLFDKDGDGTITSKELGTVMGSLGQSP-TEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSD-DELADMLHEADSDGDG 134          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 51/146 (34.93%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  306 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEAL------ISRV------GNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG-DELCTLDDCRGMIALVDKTGMG 704
            ++ D   EL +  +L DRD DG + R EL   L RLG  P  +EE+ + ++ +D  GDG + ++        + RV      G  +C+   E  ++E FD FD + DG IT +EL  V   LG  +  T +DC  MI  VD+ G G
Sbjct:    1 MACDQQAELRRVFELFDRDGDGRITREELTESLERLGM-PVHREELAATIARIDANGDGCVDMDEFTQLYETVMRVDGGGGGGGGACD-VDEASMREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDG 144          
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CML11_ARATH4.135e-1334.33Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CALM_SUBDO4.135e-1333.58Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_PYUSP4.135e-1333.58Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_PAXIN4.135e-1334.31Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM_MEDSA4.135e-1336.51Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2[more]
CALM2_ORYSJ4.135e-1336.51Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM2_ORYSI4.135e-1336.51Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2... [more]
CALL3_HUMAN4.135e-1331.39Calmodulin-like protein 3 OS=Homo sapiens GN=CALML... [more]
CML2_ORYSJ5.400e-1334.92Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CML17_ORYSJ5.400e-1334.93Probable calcium-binding protein CML17 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
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