FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPAC-EPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E+ +  +  D + DG + RSEL AL   LG    T +E+  M++E D +GDG+I L+   +    +S + A  E +L+  F  FDAD +G I+A EL  V   LG E  T+  CR MI  VD+ G G
Sbjct:   40 EMERVFRKFDANGDGRISRSELGALFESLG-HAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLG-EKATVQQCRRMIEGVDQNGDG 164          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+ +++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     +   E EL E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADNLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     E   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MTDALSEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 46/137 (33.58%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E+  M++EVD +G+G I     ++ +     +   E E+KE F  FD D +G I+A EL  V T LG++L + D+   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELLVMINEVDADGNGTIDFPEFLTMMARKMKDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKL-SEDEVEEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLG-DELCTLDDCRGMIALVDKTGMG 704
            EL +  ++ DR+ DG + + EL   L  LG   P ++ V+ M+ ++D  GDGY+ +E           E   E +++E F+ FD + DG IT EEL  V   LG  +  TL+DC+ MI+ VD  G G
Sbjct:    5 ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQ-MIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDG 130          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++E+D +G+G I     ++ +     +   E EL E F  FD D DG I+A+EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKL-TNEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++E+D +G+G I     ++ +     +   E EL E F  FD D DG I+A+EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKL-TNEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_EUGGR (Calmodulin OS=Euglena gracilis PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD++G G I     ++ +     +   E E+KE F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDQDGSGTIDFPEFLTLMSRKMHDTDTEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     E   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALL3_MOUSE (Calmodulin-like protein 3 OS=Mus musculus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++E+D++G+G +     ++ +     +   E E++E F  FD D +G ++A EL  V TKLG++L   ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGSITTQELGTVMRSLGQNP-TEAELQGMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSD-EEVDEMIQAADTDGDG 135          
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CML10_ORYSJ5.400e-1338.58Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CALM_STYLE5.400e-1334.31Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]
CALM_HALOK5.400e-1334.31Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALM_BLAEM5.400e-1333.58Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CML3_ARATH7.053e-1336.22Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CALM_PLAFA7.053e-1335.71Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_PLAF77.053e-1335.71Calmodulin OS=Plasmodium falciparum (isolate 3D7) ... [more]
CALM_EUGGR7.053e-1335.71Calmodulin OS=Euglena gracilis PE=1 SV=2[more]
CALMB_HALRO7.053e-1333.58Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]
CALL3_MOUSE7.053e-1330.66Calmodulin-like protein 3 OS=Mus musculus GN=Calml... [more]

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Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
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