FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     +   E EL E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     +   E EL E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     +   E EL E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135
[Close]
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 3 
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     +S +     +   E EL E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADVDGDG 135
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CALM_RABIT1.203e-1232.85Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S... [more]
CALM_PROMN1.203e-1234.31Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PONAB1.203e-1232.85Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3[more]
CALM_PFIPI1.203e-1234.31Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_PERFV1.203e-1232.85Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3[more]
CALM_ONCSP1.203e-1232.85Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2[more]
CALM_MOUSE1.203e-1232.85Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2[more]
CALM_KARMI1.203e-1234.31Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_HUMAN1.203e-1232.85Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2[more]
CALM_HETTR1.203e-1234.31Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
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