FC932484
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34 Identity = 89/216 (41.20%), Postives = 122/216 (56.48%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSIFTANTR-LNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 677 MG+ + QR GRG+I N L ++ T+ G+ V +I+H+ G P+AKV+ +F FI A +G+ +GQ I G+ + ++GNI+P +PEG ++NVE GD G RT+G+Y V+G + +GK ++LPSG K I A VG VAGGG +KPLLKAG K+ VK WP RGVAMN V HPHGGG Sbjct: 1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTIT-----GHHIAKVVDILHNPGMTEPVAKVKLDTGIQF------FIPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKS--EGKVILRLPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGG 203
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34 Identity = 85/224 (37.95%), Postives = 115/224 (51.34%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MG I Q +G+G + A + KA + F A R V +I HD R P+A V+ K E + EG+ GQ + G A + GN LPL+++P G + N+E + GD G R+SG +IG + GK V++PSG K VG+VAGGGR DKP+LKAG+ HK WP+ RGVAMN +DHP GGG G+P+ Sbjct: 1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEGKASDKK--EYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSA--GKVGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPK 216
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.836e-31 Identity = 82/224 (36.61%), Postives = 115/224 (51.34%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MG I+ Q +GRG + A + KA + D RGV+ +I HD R P+A V+ K + T EG+ G + G A + GN LP++ +P G+ I N+E + GD G R SG +I + + VK+PSG K + VG+VAGGGR +KP +KAG+ HK + WP+ RGVAMN +DHP GGG +GRP+ Sbjct: 1 MGHRIKTQNRGRGGPTYRAPSHQYKAELKHLGNDKVTV----RGVIIDIEHDPARHTPIALVRLEGEGKKVYLLVT----EGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVD--RVGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30 Identity = 80/224 (35.71%), Postives = 113/224 (50.45%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MG I Q +GRG + A + KA + + G + +I HD R AP+A VQ K ++ EG+ G+ + G + + GN LPL S+P G+ I N+E + D G R++G V+ + + V++PSG K R VGIVAGGGR +KP +KAG HK ++WP+ RGVAMN +DHP GGG GRP+ Sbjct: 1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDGSKVYILV-----TEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVVDKIGD--RIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPK 213
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28 Identity = 79/224 (35.27%), Postives = 112/224 (50.00%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFA-EAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 MG I Q +G G T ++ A + L A E Y + +I HD R P+A V ++ EGM G + G +A + GN LPL +P G+ + N+E D G R SG TV + +G+ V++PSG+ K R +GIVAGGGR++KP +KAG+ HK ++WP+ RG AMN +DHP GGG +GRP+ Sbjct: 1 MGHRITTQSRGHGGP-TYRAPSHRYKAALKHLGRAGETVSYK---IIDIEHDPARHTPIALVDVPDGENTYVLV-----TEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVT--DKMEGRVAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPK 213
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28 Identity = 75/221 (33.94%), Postives = 105/221 (47.51%), Query Frame = 3 Query: 42 RVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704 R+I R G + A + KA + + A G V +I HD R AP+A + K ++ A EG+ G + G + GN LPL +P G + N+E + D G R+SG VIG +DG+ +++PSG K VGIVAGGGR +KP +KAG+ WP+ +GV MN +DHP GGG GRP+ Sbjct: 4 RIIAQNRGKGGPTYRAPSHRYKAALRHAGKNDA----LVSGNVIDIEHDPARHAPIALARLDSGEKIYVL-----ATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQHCGRPK 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.298e-28 Identity = 80/222 (36.04%), Postives = 110/222 (49.55%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ I QR+G GS+ + ++P+ +D VVK+IIH GR +PL ++ K I T G Y GQ I AG + G LA++P+G+ + N+E GD G R++G + V+ H + +KLPSG+ + R VG+VA G D P+LKAG H K RGVAMN V+HPHGGGN GRP Sbjct: 1 MGKHIIPQRRGHGSL------VYRSPSHRHVVDVKHLKP-GEYVVKDIIHAPGRNSPLLELVDSTGKKVYQIAFT-----GAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRP 207 HSP 2 Score: 21.557 bits (44), Expect = 5.298e-28 Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2 Query: 680 HQHIG*ASTISRYA 721 HQH+G ST+ R A Sbjct: 201 HQHVGRPSTVGRNA 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 8.972e-28 Identity = 75/222 (33.78%), Postives = 114/222 (51.35%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGR 698 MG+ +R+GRG + F A T A A++ + E G V +++H+ GR APLAK++F I A G G + G + + GN++ + ++P+GT + NVE+ GD GA+ +++G TV H +G +KLPSG + R MVG +AGGG +++P + AG +F K +P RGVA HPHGGG G+ Sbjct: 1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDG-----IVSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHG--EGGVVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQ 212 HSP 2 Score: 23.8682 bits (50), Expect = 8.972e-28 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2 Query: 680 HQHIG*ASTISRYA 721 HQH+G +ST+SR A Sbjct: 207 HQHVGQSSTVSRNA 220
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.371e-27 Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701 MG+ I QR+G GS+ + ++P+ + T V+K+IIH GR APL ++ K I T G + GQ I AG +++ G LA++P+G+ + N+E GD G R++G + V+ H +KLPSG + R +G+VA G D P+LKAG H K RGVAMN V+HPHGGGN GRP Sbjct: 1 MGKHIIPQRRGHGSL------VYRSPSHRHITEVKHVDQGTY-VIKDIIHAPGRNAPLLELMGSDGKKAYQIAFT-----GAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRP 207 HSP 2 Score: 21.557 bits (44), Expect = 4.371e-27 Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2 Query: 680 HQHIG*ASTISRYA 721 HQH+G ST+ R A Sbjct: 201 HQHVGRPSTVGRNA 214
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27 Identity = 77/236 (32.63%), Postives = 119/236 (50.42%), Query Frame = 3 Query: 36 MGRVIRNQRKGRGSIFTANTRLNKA--PAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGG------GNTSTSGRPRPSPA 716 MG+ +R+GRG +T K A + +E H G + +++H+ GR APLAKV+F + +F+ A G G+ + G + + GN++ + ++P+GT++ N+E+ GD GA+ +++G TV H E VKLPSG + R M+G +AGGG +++P + AG F K +P RGVA HPHGG G +ST R P A Sbjct: 1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG------SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEG--VTVKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGA 225 The following BLAST results are available for this feature:
BLAST of FC932484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932484 ID=FC932484; Name=FC932484; organism=Citrus clementina; type=EST; length=721bpback to top |