FC932484

Overview
NameFC932484
Unique NameFC932484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:9..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 89/216 (41.20%), Postives = 122/216 (56.48%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSIFTANTR-LNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 677
            MG+ +  QR GRG+I   N   L     ++ T+      G+    V +I+H+ G   P+AKV+     +F      FI A +G+ +GQ I  G+ +  ++GNI+P   +PEG  ++NVE   GD G   RT+G+Y  V+G +  +GK  ++LPSG  K I   A   VG VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN V HPHGGG
Sbjct:    1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTIT-----GHHIAKVVDILHNPGMTEPVAKVKLDTGIQF------FIPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKS--EGKVILRLPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSHPHGGG 203          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 85/224 (37.95%), Postives = 115/224 (51.34%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MG  I  Q +G+G   + A +   KA  +     F  A    R  V +I HD  R  P+A V+       K   E  +  EG+  GQ +  G  A +  GN LPL+++P G  + N+E + GD G   R+SG    +IG +   GK  V++PSG  K         VG+VAGGGR DKP+LKAG+  HK       WP+ RGVAMN +DHP GGG     G+P+
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEGKASDKK--EYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSA--GKVGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPK 216          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.836e-31
Identity = 82/224 (36.61%), Postives = 115/224 (51.34%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MG  I+ Q +GRG   + A +   KA  +    D        RGV+ +I HD  R  P+A V+     K   +  T    EG+  G  +  G  A +  GN LP++ +P G+ I N+E + GD G   R SG    +I    +  +  VK+PSG  K   +     VG+VAGGGR +KP +KAG+  HK   +   WP+ RGVAMN +DHP GGG    +GRP+
Sbjct:    1 MGHRIKTQNRGRGGPTYRAPSHQYKAELKHLGNDKVTV----RGVIIDIEHDPARHTPIALVRLEGEGKKVYLLVT----EGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVD--RVGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 80/224 (35.71%), Postives = 113/224 (50.45%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MG  I  Q +GRG   + A +   KA  +       +      G + +I HD  R AP+A VQ     K  ++       EG+  G+ +  G +  +  GN LPL S+P G+ I N+E +  D G   R++G    V+    +  +  V++PSG  K      R  VGIVAGGGR +KP +KAG   HK     ++WP+ RGVAMN +DHP GGG     GRP+
Sbjct:    1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDGSKVYILV-----TEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVVDKIGD--RIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPK 213          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 79/224 (35.27%), Postives = 112/224 (50.00%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFA-EAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            MG  I  Q +G G   T     ++  A  + L  A E   Y    + +I HD  R  P+A V         ++       EGM  G  +  G +A +  GN LPL  +P G+ + N+E    D G   R SG   TV   +  +G+  V++PSG+ K      R  +GIVAGGGR++KP +KAG+  HK     ++WP+ RG AMN +DHP GGG    +GRP+
Sbjct:    1 MGHRITTQSRGHGGP-TYRAPSHRYKAALKHLGRAGETVSYK---IIDIEHDPARHTPIALVDVPDGENTYVLV-----TEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVT--DKMEGRVAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPK 213          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 75/221 (33.94%), Postives = 105/221 (47.51%), Query Frame = 3
Query:   42 RVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRPR 704
            R+I   R   G  + A +   KA  +    + A       G V +I HD  R AP+A  +     K  ++     A EG+  G  +  G    +  GN LPL  +P G  + N+E +  D G   R+SG    VIG   +DG+  +++PSG  K         VGIVAGGGR +KP +KAG+           WP+ +GV MN +DHP GGG     GRP+
Sbjct:    4 RIIAQNRGKGGPTYRAPSHRYKAALRHAGKNDA----LVSGNVIDIEHDPARHAPIALARLDSGEKIYVL-----ATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQHCGRPK 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.298e-28
Identity = 80/222 (36.04%), Postives = 110/222 (49.55%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ I  QR+G GS+      + ++P+    +D          VVK+IIH  GR +PL ++      K   I  T     G Y GQ I AG    +  G    LA++P+G+ + N+E   GD G   R++G +  V+ H     +  +KLPSG+ +      R  VG+VA  G  D P+LKAG   H    K       RGVAMN V+HPHGGGN    GRP
Sbjct:    1 MGKHIIPQRRGHGSL------VYRSPSHRHVVDVKHLKP-GEYVVKDIIHAPGRNSPLLELVDSTGKKVYQIAFT-----GAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRP 207          

HSP 2 Score: 21.557 bits (44), Expect = 5.298e-28
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  680 HQHIG*ASTISRYA 721
            HQH+G  ST+ R A
Sbjct:  201 HQHVGRPSTVGRNA 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.972e-28
Identity = 75/222 (33.78%), Postives = 114/222 (51.35%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGR 698
            MG+    +R+GRG + F A T    A A++   +  E      G V +++H+ GR APLAK++F        I     A  G   G  +  G  + +  GN++ + ++P+GT + NVE+  GD GA+ +++G   TV  H   +G   +KLPSG    +    R MVG +AGGG +++P + AG    +F  K   +P  RGVA     HPHGGG     G+
Sbjct:    1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDG-----IVSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHG--EGGVVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQ 212          

HSP 2 Score: 23.8682 bits (50), Expect = 8.972e-28
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  680 HQHIG*ASTISRYA 721
            HQH+G +ST+SR A
Sbjct:  207 HQHVGQSSTVSRNA 220          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.371e-27
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNTSTSGRP 701
            MG+ I  QR+G GS+      + ++P+     +       T  V+K+IIH  GR APL ++      K   I  T     G + GQ I AG   +++ G    LA++P+G+ + N+E   GD G   R++G +  V+ H        +KLPSG  +      R  +G+VA  G  D P+LKAG   H    K       RGVAMN V+HPHGGGN    GRP
Sbjct:    1 MGKHIIPQRRGHGSL------VYRSPSHRHITEVKHVDQGTY-VIKDIIHAPGRNAPLLELMGSDGKKAYQIAFT-----GAFVGQNIVAGNVDSVSPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHGQH---VTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRP 207          

HSP 2 Score: 21.557 bits (44), Expect = 4.371e-27
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  680 HQHIG*ASTISRYA 721
            HQH+G  ST+ R A
Sbjct:  201 HQHVGRPSTVGRNA 214          
BLAST of FC932484 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 77/236 (32.63%), Postives = 119/236 (50.42%), Query Frame = 3
Query:   36 MGRVIRNQRKGRGSIFTANTRLNKA--PAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIRNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGG------GNTSTSGRPRPSPA 716
            MG+    +R+GRG     +T   K    A +     +E H    G + +++H+ GR APLAKV+F         + +F+ A  G   G+ +  G  + +  GN++ + ++P+GT++ N+E+  GD GA+ +++G   TV  H  E     VKLPSG    +    R M+G +AGGG +++P + AG     F  K   +P  RGVA     HPHGG      G +ST  R  P  A
Sbjct:    1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG------SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEG--VTVKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGA 225          
The following BLAST results are available for this feature:
BLAST of FC932484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METS52.532e-3441.2050S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_METLZ7.366e-3437.9550S ribosomal protein L2P OS=Methanocorpusculum la... [more]
RL2_METPE5.836e-3136.6150S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_METB62.218e-3035.7150S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_METHJ2.711e-2835.2750S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_METMJ4.624e-2833.9450S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_THEVO5.298e-2836.0450S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_CENSY8.972e-2833.7850S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_THEAC4.371e-2735.1450S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_NITMS6.677e-2732.6350S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]

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Properties
Property NameValue
Genbank descriptionC34209B02EF PostHarveN Citrus clementina cDNA clone C34209B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932484 ID=FC932484; Name=FC932484; organism=Citrus clementina; type=EST; length=721bp
GAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTCGTGTCATC
CGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAACACCCGCCT
GAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGAGGCTCACG
GTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCGGCCGTGGT
GCTCCCCTCGCCAAGGTTCAGTTCCGCCACCCCTACAAGTTCAAGATGAT
CACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCAGTTCATCT
ACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTCCTCTCGCC
TCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAGGCTGGTGA
CCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGTTATTGGCC
ACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCGGTGCCAAG
AAGGTCATCAGGAACACCGCTCGCGGTATGGTTGGTATCGTTGCCGGTGG
TGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAAGCACAAGT
TCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTGCCATGAAC
CCCGTCGATCACCCTCACGGTGGTGGTAACACCAGCACATCGGGTAGGCC
TCGACCATCTCCCGCTACGCT
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