FC932495

Overview
NameFC932495
Unique NameFC932495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 79/239 (33.05%), Postives = 109/239 (45.61%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEE-KGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG-----------------RKYDKETKIELKRENDSKR--------------XXXXXXXXXTSKAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSP 629
            ++N    LNVDCDMY N +  VR A+C F+ +    +  AFVQ+PQ+F +    EL    L++Y      G+ G  GP Y GSGCFH R ++ G                 RKY  E  +  +  N  +                        T++    C YE  T WGK IG  Y    EDV T I I  +GW S Y  P+  AFLG  P    + +VQ++RW+ G  +I+  + SP
Sbjct:  284 MTNAPYMLNVDCDMYVNEADVVRQAMCIFLQKSMDSNHCAFVQYPQDFYDSNVGEL--TVLQLYLG---RGIAGIQGPQYAGSGCFHTRRVMYGLSLDDLGDDGSLSSIATRKYLAEESLTREFGNSKEMVKSVVDALQRKPFPQKNLKDSLETAQEMGHCHYEYQTSWGKNIGWLYDSTTEDVNTSIGIHSRGWTSSYIFPDPPAFLGCMPQGGPEVMVQQRRWATGLLEILFNKQSP 517          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 73/236 (30.93%), Postives = 109/236 (46.19%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYD---------------KETKIELKRENDSKRXXXXXXXXXTS--------------KAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSP 629
            ++N  + LNVDCDM++N+ Q V  A+C  +  +      FVQ PQ+F    K++ + N L +           Y G  Y G+GCFH R+ + G + D               KE + + +   + K           S              K  +SC YE+ T WG E+G  YG   ED++TG  I   GW+S   + E  AFLG +PT     L Q KRW+ G F+I++ + +P
Sbjct:  332 MTNAPIMLNVDCDMFANDPQVVLHAMCLLLGFDDEISSGFVQVPQSFYGDLKDDPFGNKLEVI----------YKGLFYGGTGCFHCRKAIYGIEPDSIVVGREGAAGSPSYKELQFKFESSEELKESARYIISGDMSGEPIVDISSHIEVAKEVSSCNYESGTHWGLEVGWAYGSMTEDILTGQRIHAAGWRSAKLETEPPAFLGCAPTGGPACLTQFKRWATGLFEILISQNNP 557          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 77/241 (31.95%), Postives = 107/241 (44.40%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKG-HEFAFVQFPQNF--DNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDK---------ETKIELKRENDSKRXXXXXXXXXTS----------------------KAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSP 629
            ++N    LNVDCDMY+N +  VR A+C F+ + +  +  AFVQFPQ F   N  K       L +       G+ G  GPI  GSGCFH R ++ G   D+             EL  E+             TS                      +    C YE+ T WGK IG  Y    ED+ T I I  +GW S Y  P+  AFLG  P   L+ ++Q++RW+ G  +++  + SP
Sbjct:  284 MTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSQNQNHCAFVQFPQEFYDSNTIK-------LTVIKSYMGRGIAGIQGPINVGSGCFHSRRVMYGLSPDELEDNGSLSSVATRELLAEDSLSSGFGNSKEMVTSVVEALQRKPNPQNILTNSIEAAQEVGHCDYESQTSWGKTIGWLYDSMSEDMNTSIGIHSRGWTSSYIAPDPPAFLGSMPPGGLEAMIQQRRWATGSIEVLFNKQSP 517          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 74/228 (32.46%), Postives = 101/228 (44.30%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEK--GHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG-------------------RKYDKETKIE---LKRENDSKRXXXXXXXXXTSK----AFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQI 608
            +SN    +N D D Y NNSQ  R  +CF +D     G   AFVQFPQ FD+V   + Y+N  R++ +     ++G  GP Y G+G   RR  L G                    K+   T      L   N  +          +      A  +C YE  T WG+++G  Y    EDV+TG  +  QGW+SVY   E  AF G +P  L + L Q  RWS G  ++
Sbjct:  401 LSNAPFVINFDGDHYVNNSQAFRAPMCFMLDGRGRGGENTAFVQFPQRFDDVDPTDRYANHNRVFFDGTMLSLNGLQGPSYLGTGTMFRRVALYGVEPPRWGAAASQIKAMDIANKFGSSTSFVGTMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEM 628          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 74/228 (32.46%), Postives = 101/228 (44.30%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEK--GHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG-------------------RKYDKETKIE---LKRENDSKRXXXXXXXXXTSK----AFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQI 608
            +SN    +N D D Y NNSQ  R  +CF +D     G   AFVQFPQ FD+V   + Y+N  R++ +     ++G  GP Y G+G   RR  L G                    K+   T      L   N  +          +      A  +C YE  T WG+++G  Y    EDV+TG  +  QGW+SVY   E  AF G +P  L + L Q  RWS G  ++
Sbjct:  371 LSNAPFVINFDGDHYVNNSQAFRAPMCFMLDGRGRGGENTAFVQFPQRFDDVDPTDRYANHNRVFFDGTMLSLNGLQGPSYLGTGTMFRRVALYGVEPPRWGAAASQIKAMDIANKFGSSTSFVGTMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEM 598          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 74/227 (32.60%), Postives = 101/227 (44.49%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKG-HEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG-------------RKYDKETKI---------ELKRENDSKRXXXXXXXXXT----SKAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQI 608
            +SN    +N DCD Y NNSQ  R  +CF +D   G  + AFVQFPQ FD+V   + Y+N  R++ +     ++G  GP Y G+G   RR  L G             +  D   K           L   N  +          +      A  +C Y+  T WG++ G  Y    EDV TG  +  QGW+SVY   E  AF G +P  L + L Q  RWS G  ++
Sbjct:  411 LSNAPFIINFDCDHYVNNSQAFRAPMCFMLDRRGGGDDVAFVQFPQRFDDVDPTDRYANHNRVFFDGTTLSLNGLQGPSYLGTGTMFRRAALYGLEPPRWGAAGSQIKAMDNANKFGASSTLVSSMLDGANQERSITPPVAIDGSVARDLAAVTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEM 637          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 73/239 (30.54%), Postives = 106/239 (44.35%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEE-KGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG-----------------RKYDKETKIELKRENDSKR--------------XXXXXXXXXTSKAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSP 629
            ++N    LNVDCDMY+N +  VR A+C F+ +    +  AFVQFPQ F +   +E     L +       G+ G  GP Y GSGCFH R ++ G                 RKY  E  +  +  N ++                         ++    C +E  T WGK IG  Y    ED  T I I  +GW S Y  P+  AFLG  P    + ++Q++RW+ G  +++  + SP
Sbjct:  284 MTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSMNSNHCAFVQFPQEFYDSNADE-----LTVLQSYLGRGIAGIQGPTYAGSGCFHTRRVMYGLSIDDLEDDGSLSSLATRKYLAEENLAREFGNSNEMVTSVVEALQRKPNPQNTLANSLEAAQEVGHCHFEYQTSWGKTIGWLYESTAEDANTSIGIHSRGWTSSYISPKPPAFLGAMPPGGPEAMLQQRRWATGLLEVLFNKQSP 517          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.536e-25
Identity = 76/244 (31.15%), Postives = 109/244 (44.67%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEF-AFVQFPQNFDNVTKNELYSNSLRIYNEVEFE---GMDGYGGPIYCGSGCFHRREILCGRKYDK--------------------------ETKIELKRENDSKRXXXXXXXXXTSKAFAS-----CTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPAR 635
            ++N    LNVDCDMY+N++  VR A+C  + E    +  AFVQF Q F        Y +S  +   ++     G+ G  GPIY GSGC H R ++ G   D                            +K  +K   D+ +         T+   A+     C YE  T WG  IG  Y    ED+ T I I  +GW S Y  P+  AFLG  P  + + L+Q++RW+ G  +I+  + SP R
Sbjct:  285 MTNAPYILNVDCDMYANDADVVRQAMCILLQESLNMKHCAFVQFRQEF--------YDSSTELIVVLQSHLGRGIAGIQGPIYIGSGCVHTRRVMYGLSPDDFEVDGSLSSVATREFLVKDSLARRFGNSKEMMKSVVDAIQRNPNPQNILTNSIEAAREVGHCQYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDTPAFLGSMPAGVPEALLQQRRWATGWIEILFNKQSPLR 520          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETKIELKR 326
            +SN    LNVDCD Y NNS+ +R+A+CF MD + G +  +VQFPQ FD + K++ YSN   ++ ++  +G+DG  GPIY G+GC  RR+ L G  +D   K + KR
Sbjct:  540 LSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDKSDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYG--FDAPKKKKTKR 643          

HSP 2 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T+WGKEIG  YG   ED++TG  +   GW+SVYC P+  AF G +P  L   L Q  RW+ G  +I L R+ P  Y +G
Sbjct:  747 SCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKIPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 832          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.131e-22
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETK 311
            +SN    LNVDCD Y NNS+ +R+A+CF MD + G +  +VQFPQ FD + +++ YSN   ++ ++  +G+DG  GPIY G+GC  RR+ L G    K+ K
Sbjct:  552 LSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGFDAPKKKK 652          

HSP 2 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T+WGKEIG  YG   ED++TG  +   GW+SVYC P+  AF G +P  L   L Q  RW+ G  +I L R+ P  Y +G
Sbjct:  762 SCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKLAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 847          
The following BLAST results are available for this feature:
BLAST of FC932495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH1.275e-2733.05Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLH3_ORYSJ4.847e-2730.93Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLB2_ARATH4.847e-2731.95Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLF2_ORYSJ6.330e-2732.46Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ6.330e-2732.46Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ1.410e-2632.60Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLB3_ARATH1.410e-2630.54Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB1_ARATH4.536e-2531.15Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CESA5_ARATH1.613e-2245.28Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH6.131e-2244.55Cellulose synthase A catalytic subunit 6 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC34209C01EF PostHarveN Citrus clementina cDNA clone C34209C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932495 ID=FC932495; Name=FC932495; organism=Citrus clementina; type=EST; length=695bp
CATCAAAGATTAGCAATGGACAAGTCACTCTTAATGTAGACTGTGATATG
TACTCAAACAATTCACAAACTGTGAGAGATGCCCTTTGCTTCTTCATGGA
TGAAGAAAAGGGCCATGAGTTTGCTTTTGTCCAGTTTCCACAGAACTTTG
ATAATGTTACTAAGAATGAATTGTACAGCAACTCATTAAGAATATATAAT
GAGGTGGAATTTGAAGGCATGGATGGTTATGGAGGCCCAATTTATTGTGG
ATCTGGCTGTTTTCACAGAAGAGAAATTCTATGTGGAAGGAAATACGACA
AGGAAACTAAGATTGAATTGAAGAGAGAAAATGATTCAAAGAGAGAAGAA
AGTTTACTTGAATTGGAAGAAACATCGAAGGCTTTTGCAAGTTGTACCTA
TGAAACAAACACTCAATGGGGAAAGGAGATTGGATTGAAATATGGGTGTC
CGGTTGAAGATGTTATAACAGGGATATCGATCCAATGTCAAGGATGGAAA
TCAGTGTATTGCAAACCAGAAAGGGATGCATTCTTAGGTGTTTCACCGAC
CACATTGCTTCAGTTCCTCGTGCAGCGTAAGAGATGGTCTGAAGGTGATT
TCCAAATTATGCTTTGCAGATACAGTCCTGCTAGGTATGCACATGGAAAG
ATTAGCTTAGGCCTTCGCTTGGGATATTGCTGCTATTGTCTCTGG
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