FC932495

Overview
NameFC932495
Unique NameFC932495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            +SN    LNVDCD Y NNS+ +R+A+CF MD + G +  +VQFPQ FD + +++ YSN   ++ ++  +G+DG  GPIY G+GC  RR+ L G
Sbjct:  558 LSNAPYLLNVDCDHYINNSKAIREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG 650

HSP 2 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T+WGKEIG  YG   ED++TG  + C GW+SVYC P+R AF G +P  L   L Q  RW+ G  +I L R+ P  Y +G
Sbjct:  765 SCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 850
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETK 311
            +SN    LNVDCD Y NNS+ +R+++CF MD + G +  +VQFPQ FD + +++ YSN   ++ ++  +G+DG  GPIY G+GC  RR+ L G    K+ K
Sbjct:  553 LSNAPYLLNVDCDHYINNSKAIRESMCFMMDPQSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPKKKK 653

HSP 2 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T+WGKEIG  YG   ED++TG  + C GW+SVYC P+R AF G +P  L   L Q  RW+ G  +I L R+ P  Y +G
Sbjct:  761 SCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG 846
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETKIELKR 326
            ++NG   LN+DCD Y NNS+ +R+A+CF MD   G +  +VQFPQ FD + KN+ Y+N   ++ ++   G+DG  GP+Y G+GC   R  L G  Y+   K++ K+
Sbjct:  535 LTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG--YEPPIKVKHKK 638

HSP 2 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAH 644
            SC YE  + WG EIG  YG   ED++TG  +  +GW+S+YC P+  AF G +P  L   L Q  RW+ G  +I+  R+ P  Y +
Sbjct:  742 SCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGY 826
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETKIELKR 326
            ++NGQ  LN+DCD Y NNS+ +R+A+CF MD   G    +VQFPQ FD + +N+ Y+N   ++ ++   G+DG  GP+Y G+GC   R  L    Y  E  I+ KR
Sbjct:  545 LTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTAL----YGYEPPIKQKR 646

HSP 2 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  + WG EIG  YG   ED++TG  +  +GW+S+YC P+R AF G +P  L   L Q  RW+ G  +I+  R+ P  Y +G
Sbjct:  750 SCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 835
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.974e-21
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETKIELKR 326
            ++NGQ  LN+DCD Y NNS+ +R+A+CF MD   G    +VQFPQ FD + +N+ Y+N   ++ ++   G+DG  GP+Y G+GC   R  L    Y  E  I+ KR
Sbjct:  545 LTNGQYLLNLDCDHYINNSKALREAMCFLMDPNLGRRVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTAL----YGYEPPIKQKR 646

HSP 2 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  + WG EIG  YG   ED++TG  +  +GW+S+YC P+R AF G +P  L   L Q  RW+ G  +I+  R+ P  Y +G
Sbjct:  750 SCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 835
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            ++NGQ  LN+DCD Y NNS+ +R+A+CF MD   G    +VQFPQ FD + +N+ Y+N   ++ ++   G+DG  GP+Y G+GC   R  L G
Sbjct:  552 LTNGQYMLNLDCDHYINNSKALREAMCFLMDPNLGRSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYG 644

HSP 2 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T+WG EIG  YG   ED++TG  +  +GW+S+YC P+R AF G +P  L   L Q  RW+ G  +I+  R+ P  Y +G
Sbjct:  758 SCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG 843
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETK 311
            +SN    LN+DCD Y NNS+ +R+A+CF MD   G +  +VQFPQ FD + +++ Y+N   ++ ++  +G+DG  GPIY G+GC  RR+ L G    K  K
Sbjct:  555 LSNAPYLLNLDCDHYINNSKAIREAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKTKK 655

HSP 2 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T WGKEIG  YG   ED++TG  + C GW+S+YC P+R AF G +P  L   L Q  RW+ G  +I   ++ P  Y +G
Sbjct:  769 SCGYEDKTDWGKEIGWIYGSITEDILTGFKMHCHGWRSIYCIPKRPAFKGSAPLNLSDRLHQVLRWALGSVEIFFSKHCPLWYGYG 854
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETK 311
            ++N    LN+DCD Y NNS+ +++A+CF MD   G +  +VQFPQ FD + +++ Y+N   ++ ++  +G+DG  GPIY G+GC  RR+ L G    K  K
Sbjct:  554 LTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKSKK 654

HSP 2 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T WGKEIG  YG   ED++TG  + C GW+S+YC P+R AF G +P  L   L Q  RW+ G  +I    + P  Y +G
Sbjct:  769 SCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYG 854
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETK 311
            ++N    LN+DCD Y NNS+ +++A+CF MD   G +  +VQFPQ FD + +++ Y+N   ++ ++  +G+DG  GPIY G+GC  RR+ L G    K  K
Sbjct:  554 LTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKSKK 654

HSP 2 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARYAHG 647
            SC YE  T WGKEIG  YG   ED++TG  + C GW+S+YC P+R AF G +P  L   L Q  RW+ G  +I    + P  Y +G
Sbjct:  769 SCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYG 854
[Close]
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 3 
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            ++N    LN+DCD Y NNS+ VR+A+CF MD   G +  FVQFPQ FD + K++ Y+N   ++ +V   G+DG  GP+Y G+G   RR+ L G
Sbjct:  460 LTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGQDVCFVQFPQRFDGIDKSDRYANRNIVFFDVNMRGLDGIQGPVYVGTGTVFRRQALYG 552

HSP 2 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 3 
Query:  390 SCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCRYSPARY 638
            SC YE  T+WGKEIG  YG   ED++TG  + C+GW+S+YC P R AF G +P  L   L Q  RW+ G  +I L R+ P  Y
Sbjct:  660 SCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWY 742
The following BLAST results are available for this feature:
BLAST of FC932495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA9_ARATH8.007e-2246.24Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA2_ARATH1.046e-2143.56Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA3_ARATH1.784e-2141.51Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ3.974e-2142.45Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI3.974e-2142.45Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ORYSJ5.190e-2144.09Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA6_ORYSJ1.972e-2042.57Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA5_ORYSJ7.495e-2040.59Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI7.495e-2040.59Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA8_ARATH9.788e-2045.16Cellulose synthase A catalytic subunit 8 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209C01EF PostHarveN Citrus clementina cDNA clone C34209C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932495 ID=FC932495; Name=FC932495; organism=Citrus clementina; type=EST; length=695bp
CATCAAAGATTAGCAATGGACAAGTCACTCTTAATGTAGACTGTGATATG
TACTCAAACAATTCACAAACTGTGAGAGATGCCCTTTGCTTCTTCATGGA
TGAAGAAAAGGGCCATGAGTTTGCTTTTGTCCAGTTTCCACAGAACTTTG
ATAATGTTACTAAGAATGAATTGTACAGCAACTCATTAAGAATATATAAT
GAGGTGGAATTTGAAGGCATGGATGGTTATGGAGGCCCAATTTATTGTGG
ATCTGGCTGTTTTCACAGAAGAGAAATTCTATGTGGAAGGAAATACGACA
AGGAAACTAAGATTGAATTGAAGAGAGAAAATGATTCAAAGAGAGAAGAA
AGTTTACTTGAATTGGAAGAAACATCGAAGGCTTTTGCAAGTTGTACCTA
TGAAACAAACACTCAATGGGGAAAGGAGATTGGATTGAAATATGGGTGTC
CGGTTGAAGATGTTATAACAGGGATATCGATCCAATGTCAAGGATGGAAA
TCAGTGTATTGCAAACCAGAAAGGGATGCATTCTTAGGTGTTTCACCGAC
CACATTGCTTCAGTTCCTCGTGCAGCGTAAGAGATGGTCTGAAGGTGATT
TCCAAATTATGCTTTGCAGATACAGTCCTGCTAGGTATGCACATGGAAAG
ATTAGCTTAGGCCTTCGCTTGGGATATTGCTGCTATTGTCTCTGG
back to top