FC932495

Overview
NameFC932495
Unique NameFC932495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCGRKYDKETKIELKRENDSK 341
            +SNG   LN+DCD Y  N + VR+ +CF MD   G +  ++QFPQ F+ +  ++ Y+N+  ++ +     +DG  GP+Y G+G   RR  L G       K+  K+E++++
Sbjct:  602 LSNGPFILNLDCDHYIYNCKAVREGMCFMMDRG-GEDICYIQFPQRFEGIDPSDRYANNNTVFFDGNMRALDGVQGPVYVGTGTMFRRFALYGFDPPNPDKLLEKKESETE 711          

HSP 2 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  375 SKAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCR 620
            S +  SC YE  T+WG  +G  YG   EDV+TG  +  +GW+SVYC  +RD+F G +P  L   L Q  RW+ G  +I   R
Sbjct:  781 SVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDSFRGSAPINLTDRLHQVLRWATGSVEIFFSR 862          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            +SNG   LN+DCD Y  NS+ +++ +CF MD   G    ++QFPQ F+ +  ++ Y+N   ++ +     +DG  GP+Y G+GC  RR  L G
Sbjct:  515 LSNGAFILNLDCDHYIYNSKAIKEGMCFMMDRG-GDRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPVYVGTGCMFRRYALYG 606          

HSP 2 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 3
Query:  381 AFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCR 620
            A  SC YE NT+WG  IG  YG   EDV+TG  +  +GW+SVYC  +RDAF G +P  L   L Q  RW+ G  +I   +
Sbjct:  715 AVISCWYEDNTEWGDRIGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSK 794          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            +SNG   LN DCD Y  N Q +R+A+C+ +D   G    ++QFPQ F+ +  ++ Y+N   ++ +     +DG  GP+Y G+GC  RR  + G
Sbjct:  484 LSNGPFMLNFDCDHYIYNCQAIREAMCYMLDRG-GDRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPMYVGTGCLFRRYAIYG 575          

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  375 SKAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCR 620
            S +  SC YE NT+WG+ +G  YG   EDV+TG  +  +GW+SVYC   RDAF G +P  L   L Q  RW+ G  +I   +
Sbjct:  689 SVSVISCWYEDNTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSK 770          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            +SNG   LN DCD Y  N Q +R+A+C+ +D   G    ++QFPQ F+ +  ++ Y+N   ++ +     +DG  GP+Y G+GC  RR  + G
Sbjct:  484 LSNGPFMLNFDCDHYIYNCQAIREAMCYMLDRG-GDRICYIQFPQRFEGIDPSDRYANHNTVFFDGNMRALDGLQGPMYVGTGCLFRRYAIYG 575          

HSP 2 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  375 SKAFASCTYETNTQWGKEIGLKYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLCR 620
            S +  SC YE NT+WG+ +G  YG   EDV+TG  +  +GW+SVYC   RDAF G +P  L   L Q  RW+ G  +I   +
Sbjct:  689 SVSVISCWYEDNTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSK 770          
BLAST of FC932495 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 3
Query:    9 ISNGQVTLNVDCDMYSNNSQTVRDALCFFMDEEKGHEFAFVQFPQNFDNVTKNELYSNSLRIYNEVEFEGMDGYGGPIYCGSGCFHRREILCG 287
            ++NG   LN+DCD   NNS  +R+A+CF MD   G+   FVQF                  ++ ++E + +DG  GP+Y GSGC   R+ L G
Sbjct:  324 LTNGAYVLNLDCDHCVNNSSALREAMCFMMDPVAGNRTCFVQFALRDS--------GGGDSVFFDIEMKCLDGIQGPVYVGSGCCFSRKALYG 408          
The following BLAST results are available for this feature:
BLAST of FC932495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLD4_ARATH1.120e-1534.23Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD1_ARATH1.463e-1537.63Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD5_ORYSJ7.259e-1536.56Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI7.259e-1536.56Putative cellulose synthase-like protein D5 OS=Ory... [more]
CESAB_ORYSJ4.869e-1136.56Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionC34209C01EF PostHarveN Citrus clementina cDNA clone C34209C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932495 ID=FC932495; Name=FC932495; organism=Citrus clementina; type=EST; length=695bp
CATCAAAGATTAGCAATGGACAAGTCACTCTTAATGTAGACTGTGATATG
TACTCAAACAATTCACAAACTGTGAGAGATGCCCTTTGCTTCTTCATGGA
TGAAGAAAAGGGCCATGAGTTTGCTTTTGTCCAGTTTCCACAGAACTTTG
ATAATGTTACTAAGAATGAATTGTACAGCAACTCATTAAGAATATATAAT
GAGGTGGAATTTGAAGGCATGGATGGTTATGGAGGCCCAATTTATTGTGG
ATCTGGCTGTTTTCACAGAAGAGAAATTCTATGTGGAAGGAAATACGACA
AGGAAACTAAGATTGAATTGAAGAGAGAAAATGATTCAAAGAGAGAAGAA
AGTTTACTTGAATTGGAAGAAACATCGAAGGCTTTTGCAAGTTGTACCTA
TGAAACAAACACTCAATGGGGAAAGGAGATTGGATTGAAATATGGGTGTC
CGGTTGAAGATGTTATAACAGGGATATCGATCCAATGTCAAGGATGGAAA
TCAGTGTATTGCAAACCAGAAAGGGATGCATTCTTAGGTGTTTCACCGAC
CACATTGCTTCAGTTCCTCGTGCAGCGTAAGAGATGGTCTGAAGGTGATT
TCCAAATTATGCTTTGCAGATACAGTCCTGCTAGGTATGCACATGGAAAG
ATTAGCTTAGGCCTTCGCTTGGGATATTGCTGCTATTGTCTCTGG
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