FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13391 contig Ccv1_Contig13391:128..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.262e-65
Identity = 123/227 (54.19%), Postives = 163/227 (71.81%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL----QGETLKSSICTVAVVGAGEAFHIL 728
            MFRNQYD+DVT WSP GRL QVEYAMEAVK G+A +GL++K + VL  + K  SELS  Q+KI  +DDH+G++IAGLTAD RVLSRY+RSEC+NY ++Y++  PV RL+  L +K Q  TQR  +RPYGVGLLVAG DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE+    F +S+++++I+  + AI  TL    QG+       TVA+VG  + F IL
Sbjct:    1 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTIL 227          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.550e-62
Identity = 113/216 (52.31%), Postives = 154/216 (71.30%), Query Frame = 3
Query:   81 TDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725
            +DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLER    F++    +L+K  L A+RETL  E  L +   ++ +VG    F I
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTI 222          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.542e-61
Identity = 117/221 (52.94%), Postives = 156/221 (70.59%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEAF 719
            MFRNQYD D TTWSP GRL QVEYA+EA+KQGSA +GL SKTH VL  + +   ELSS+QKK+ ++DDHIG+AIAGL  D RVLS YM+ E ++    +  P+PV RL+ ++A+KAQ+ TQ   +RPYGVG LV G DE G HL    PSG   EY   ++GSRSQ+A+TY+ER  + F +S+RE+LI  AL A+R+TL + + L     +++V+G  E +
Sbjct:    1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKY 221          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.187e-59
Identity = 108/224 (48.21%), Postives = 158/224 (70.54%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG-ETLKSSICTVAVVGAGEAFHIL 728
            MFRNQYD DVT WSP GRL QVEYA+EA+KQGSA +G++S+TH V+  + +A ++LSSHQKK++++D H GV+IAGL +DGR+L+RY+++EC ++ + Y+  +P+ +L   +  K Q  TQ   +RP+GVG+L+AG D+ GAH+    PS         +IG+RSQ+A+TYLER  +NF +ST E LI  AL+A+R+TL   E L +   ++ +VG    F +L
Sbjct:    1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLL 224          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.775e-59
Identity = 114/225 (50.67%), Postives = 161/225 (71.56%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEAFHIL 728
            MF+NQYDT+ TTWSP GRLFQVEYA EAV  GSAA+G ++K  VVL  + ++  ++ SS+Q+K+FK+DDH+G+AIAGL ADGR+L+R++R+EC+NY Y ++S  P+  +   + +K Q   Q + KRP+GVGLL+AG D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE+ FE+F +   ++LI  AL A+   T  G  L     T+A+VG G  F +L
Sbjct:    1 MFKNQYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKRSPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVL 225          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.845e-56
Identity = 115/225 (51.11%), Postives = 153/225 (68.00%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEAFHIL 728
            MF+NQYDTD TTWSP GRLFQVEYA EAV  GSAA+G++   +VVL  + +   S LSS+Q+K FK+D+H+G+AI+GL ADGR LSR++R+EC+NY Y ++S  P+  L   +  K Q   Q + KRP+GVGLL+AG D +G  LY   PSG+ F+++A A+G RSQAA+TYLER F  F     ++L+  AL A+   T  G  L     T+A+VG G  F IL
Sbjct:    1 MFKNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKRNPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGVELNIKNTTIAIVGKGTPFTIL 225          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.253e-53
Identity = 113/224 (50.45%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            MFRN YD D  T+SP GRLFQVEYA+EA+KQGS  +GLRS TH VL  + +   ELSS+QKKI K D+H+G+++AGL  D RVLS Y+R +C   S  +   L V R    L DKAQ  TQ    RPYGVGLL+ G D+ GAHL    PSGN  E    AIG+RSQ AKTYLER  + F   +   ++LIK  + AI ++L+ E+L     ++A+VG    F I
Sbjct:    1 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTI 224          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.393e-40
Identity = 98/230 (42.61%), Postives = 138/230 (60.00%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL-SSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            M R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVLG   +  S L  SH  +K+F++D HIG AI+GLTAD R +  + R +  N+ +TY+ P  +      + D A      +   +R   RP+GV LL+AG+DE G  LY++ PSG YF Y+A AIGS S+ AK+ L + F    + T E+     L  +R+ ++ E L S    +A V A   FHI
Sbjct:    3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFH--KDMTLEEAEVLILKVLRQVME-EKLDSKNVQLAKVTAEGGFHI 229          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.288e-37
Identity = 87/214 (40.65%), Postives = 134/214 (62.62%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ +K  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y+++Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A AIG+ +QAA++ L++ +++  + TRED +K AL A+ +T+   +L S    +A V
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKD--DVTREDAVKLALKALSKTMDSTSLTSEKLELAEV 215          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.058e-36
Identity = 87/221 (39.37%), Postives = 136/221 (61.54%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS-SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            + Y   +TT+SP+G+L Q+E+A++A   G +AIG+++K  VVL    K +S +  +  +KI  + ++IG+  AG+  D RVL +  R E   Y   Y+  +PV +LV +LA   Q  TQ    RP+GV LLVAG DEKG HLY   PSG+YF ++A AIG    ++KT+LE+R+ +  E   ED I+ AL+ I+E  + +  + ++  +A++G  + F IL
Sbjct:    3 SDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHSLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEI--EDAIQTALITIKEGFETQLTEFNM-ELAIIGKNQEFKIL 220          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA1_DROME8.262e-6554.19Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_CHICK8.550e-6252.31Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_SCHPO5.542e-6152.94Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_CAEEL5.187e-5948.21Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_TRYCR6.775e-5950.67Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_TRYBR1.845e-5651.11Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_YEAST4.253e-5350.45Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA5_SCHPO5.393e-4042.61Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA4_SPIOL7.288e-3740.65Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA2_DICDI8.058e-3639.37Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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