FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 72/210 (34.29%), Postives = 117/210 (55.71%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            M +  Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   +   K+  +  HIG+  +G+  D RVL    R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+ G +E   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAKRGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 77/206 (37.38%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVL-GCVNKANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ-GETLKSS 680
            YD  +T +SP G L+QV+YA EAVK+G   +G+++K  VVL G   KA   L     +K+F +DDH+G + AGL +DGR+L  Y RS+ + +   Y+ P+ +  L   ++D  Q+ TQ    RP+GV L++ G+D  K   L    PSG +  Y A AIG     A  Y E+ +    +   +D I   + A+  TL+ GE L  S
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVDSIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYTQHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYR--EDLNMQDTILLGIRALASTLKPGEKLAPS 213          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 80/213 (37.56%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD---EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICT 689
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    VVLG   K+  +L  S   +KI  +D HI +A AGL AD RVL    R EC ++  T E  + V  +   +A   Q  TQ    RP+G+  L+ G D   +K A LY   PSG +  ++A A G  S + + +LE+   N+ E++ ++ IK A+ A+ E ++  G+ ++ ++ T
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPA-LYQTDPSGTFSAWKANATGRNSNSMREFLEK---NYKETSGKETIKLAIRALLEVVESGGKNIEIAVMT 211          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 80/213 (37.56%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD---EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICT 689
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    VVLG   K+  +L  S   +KI  +D HI +A AGL AD RVL    R EC ++  T E  + V  +   +A   Q  TQ    RP+G+  L+ G D   +K A LY   PSG +  ++A A G  S + + +LE+   N+ E++ ++ IK A+ A+ E ++  G+ ++ ++ T
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPA-LYQTDPSGTFSAWKANATGRNSNSMREFLEK---NYKETSGKETIKLAIRALLEVVESGGKNIEIAVMT 211          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 72/210 (34.29%), Postives = 116/210 (55.24%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   +   K+  +  HIG+  +G+  D RVL    R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+ G +E   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 72/210 (34.29%), Postives = 116/210 (55.24%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   +   K+  +  HIG+  +G+  D RVL    R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+ G +E   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 72/210 (34.29%), Postives = 116/210 (55.24%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   +   K+  +  HIG+  +G+  D RVL    R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+ G +E   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 74/189 (39.15%), Postives = 105/189 (55.56%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST-REDLIKDA 632
            YD  VTT+SP GR+FQVEYA +AV      +G++ K  +VLG      S+  L    ++I  V  H G+A+AGL ADGR +    +SE  +Y   Y  P+ V  L  ++A    +CT   W RP+G G+++ G D  G  LY   PSG  ++Y   A+G   QAAKT +E+     SE T RE +++ A
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKL--KLSELTCREGIVEVA 194          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 74/179 (41.34%), Postives = 104/179 (58.10%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 605
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R++  VVL    +  S L      +KI K DDHIG+A AG  AD R L  + R +       Y+ P+ V  L   + D  Q  TQ    RP+GV L++ G+++    LY   PSG  +E+QA A+G+     + YLE   E++SES
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIEDGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLE---EHYSES 185          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 78/213 (36.62%), Postives = 122/213 (57.28%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            YD  +T +SP GRL+QVEYA +AVK  G  +IG+R K  V +    K   +L  H     +F +  +IG+   GLTAD R L    R+E   + + +   +PV  L   +ADKAQV TQ ++ RP GV  +V G D EK A L+   P+G++F ++A + G + Q A  +LE++ ++  + + E+ ++ A+ A++  LQ E  K++   V VV
Sbjct:    9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQ-EDFKATEIEVGVV 220          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_MOUSE1.922e-2934.29Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSMA_SULTO2.511e-2937.38Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA7B_ORYSJ2.511e-2937.56Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI2.511e-2937.56Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA2_RAT3.279e-2934.29Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_HUMAN3.279e-2934.29Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN3.279e-2934.29Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA3_ORYSJ4.283e-2939.15Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSMA_NATPD5.594e-2941.34Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSA6_ORYSJ7.305e-2936.62Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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