FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 74/189 (39.15%), Postives = 105/189 (55.56%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST-REDLIKDA 632
            YD  VTT+SP GR+FQ+EYA +AV      +G++ K  +V+G      S+  L    ++I  V  H G+A+AGL ADGR +    +SE  +Y   Y   +PV  L  ++A    +CT   W RP+G G+++ G D  G  LY   PSG  + Y   AIG   QAAKT +E+   N SE T +E +I+ A
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKL--NLSEMTCKEGVIEVA 194          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 80/217 (36.87%), Postives = 116/217 (53.46%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAF 719
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    ++ S L   +  +KI K DDHIG+A AG  AD R L  + R +       Y  P+ +  L  ++ D  Q  TQ    RP+GV LL+ G++     LY   PSG  +E++A +IG+     + +LE  F +  + T ++ I+ AL AI  T    T    +    V    E F
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRD--DLTLDEGIELALEAIASTSDEGTAPDGVDVATVSAETERF 224          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 74/204 (36.27%), Postives = 118/204 (57.84%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVA------IAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R +  VVLG   K+ ++L   +  +KI  +DD++ +A      ++GLTAD R++    R EC ++  T   P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQ 206          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++D+HIG A +GL AD R L    R E      +Y+ P+ V  +  ++ D  Q  TQ    RPYG  LL+AG+D+    L+   PSG   EY+A AIG+   A         E F    RED+  DA + +
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAV-------VEVFEADYREDMNMDAAILL 191          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++DDHIG A +GL AD R L    R E      +Y+ P+ V  +  ++ D  Q  TQ    RPYG  LL+AG+D+    L+   PSG   EY+A AIG+   A         E F    R+D+  DA + +
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGRNAV-------VEVFEAEYRQDMNMDAAILL 193          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 587
            YD  +T +SP GRL+QVEYA EAVK+G+A++G+R++  VV+     A S L      +KI ++D H+GVA AG  AD R L    R +       Y+ P  V  L  ++ D  Q  TQ    RP+GV LLVAG+++    L+   PSG  +E+QA AIG   +  +T+LE  +
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIEDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEY 181          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 70/198 (35.35%), Postives = 113/198 (57.07%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G LFQVEYA EAV++G  A+G++ K  ++     K+  +L   +  +KI+K+D+HI +A AGL+AD RV+  + + EC  +  +YE  + V  LV  +A   Q  TQ S  RPYGV  ++ G +E G   L+   PSG    + A AIG   +    ++E+ +++    TR+  +  A+ A+ E ++
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQD--GMTRDRCVHFAIKALLEAVE 198          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 80/216 (37.04%), Postives = 124/216 (57.41%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC-INYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVG 704
            ++Y   +TT+SP+G+L Q++YA+ AVKQG  ++G+++   VV+    K++S L+  +   K+  +   IG   +G+  D RVL    R     +Y   Y    P   LV ++A   Q  TQ    RP+GV LL+AG DE  G  LY   PSG+YF ++A AIG  S AAKT+LE+R+ +  E   ED I  AL+ ++E+++GE        +A++G
Sbjct:    3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTLKESVEGE-FNGDTIELAIIG 215          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 76/202 (37.62%), Postives = 109/202 (53.96%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDAL----MAIRETLQ 659
            YD   T +SP G L+QV YA EAVK+G  ++G+++   VV+    +    L       KI+K+DDHIGVA AG+  DGR+L  Y R   + +   Y  P PV  +   +AD  Q  TQ    RP+GV L+ AG++  G   +Y   P G YF ++A AIGS  Q A    E+ +   S+ + E+  K AL      IR+T++
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYR--SDMSLEEATKLALKILYAIIRKTVE 211          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 74/211 (35.07%), Postives = 119/211 (56.40%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS-ESTREDLIKDALMAIRETLQGETLKSSICT 689
            +YD+  T +SP GRL+QVEYAMEA+      +G+ S   +V+    K   +L   S   +K++++ D+I   +AG+TAD  +L  ++R    +Y  +Y   +PV +LV  L ++ Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IGS  QAA T L++ +++ + E  ++  IK     +   L  E ++ ++ T
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNLEEAKQLAIKVLWKTLDVKLASEKVEMAVLT 214          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA3_ARATH7.305e-2939.15Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSMA1_HALVO9.541e-2936.87Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA7_RAT9.541e-2936.27Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSMA_METAC1.246e-2839.58Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METBF1.627e-2839.58Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA2_HALMA1.627e-2840.46Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA7_TRYBB3.626e-2835.35Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA2_YEAST3.626e-2837.04Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSMA_AERPE4.735e-2837.62Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA4_CAEEL4.735e-2835.07Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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