FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 76/199 (38.19%), Postives = 106/199 (53.27%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE 665
            YD  +T +SP GRL+QVEYA EAVK+G+ A+G++    +VL    + NS+L   S  +KIFK+D+HIGVA +GL  D R L    R E      +Y+  + V  L  +L D  Q  TQ    RPYG  LL+AG+ +    L+   PSG   EY+A  IG    A     E  +    E++  D I   L A+    +G+
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYN--PEASIRDAILLGLKALHAATEGK 205          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 71/201 (35.32%), Postives = 113/201 (56.22%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ---KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG--AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS-ESTREDLIKDALMAIRETLQ 659
            YD  ++ +SP G +FQVEYA+EAVK+G+ A+G++ K  VVLGC  ++  +L   +    K+ K+D H+ ++ +GL AD R+L    R E  ++  T E P+ V  L   +A   Q  TQ    RP+GV  L+AG D +     LY   PSG Y  + A  IG  S+  + +LE+ ++     +T E+ +K  + ++ E +Q
Sbjct:    4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 81/229 (35.37%), Postives = 121/229 (52.84%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPL-------PVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+ +   VVL    +  S L   S  +KI +VD HIG A +GL AD R L    R EC N+ + Y   +        V  L +Q  D        +  RP+GV +L AG++     L++  PSG +  + A AIGS S+ A+  L+  F    + T ++ I  +L  +++ ++ E L S+   V  +     F++
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFR--PDLTLDEAIDISLNTLKQVME-EKLNSTNVEVMTMTKEREFYM 230          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 71/174 (40.80%), Postives = 99/174 (56.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 590
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++DDHIG A +GL AD R L    R E      +Y+  + V  +  ++ D  Q  TQ    RPYG  LL+AG+D+K   L+   PSG   EY+A AIG+   A     E  ++
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYK 180          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 76/192 (39.58%), Postives = 105/192 (54.69%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++DDHIG A +GL AD R L    R E      +Y+  + V  +  ++ D  Q  TQ    RPYG  LL+AG+D+    L+   PSG   EY+A AIG+   A         E F    RED+  DA + +
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAV-------VEVFEADYREDMNIDAAILL 193          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 73/200 (36.50%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            ++YD  VT +SP GRL QVEYA EAV++GS A+G+R    VVLG   K+ ++L   +  +KI  V DH+ +A AGLT D R+L    + EC ++    E P+ +  +   +A   Q  TQ + +RP+G+  L+ G D  G+ +L+   PSG ++EY+A A G  ++  + + E+++     ST    +K A+ A+ E  Q
Sbjct:    3 SRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKIC-VLDHVVMAFAGLT-DARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQ 200          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 69/183 (37.70%), Postives = 104/183 (56.83%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTRED 617
            YD  +T +SP GRL+QVEYA EAVK+G+A++G+R+   +VL    ++ S L   +  +KI K DDH+G+A AG  AD R L  + R +       Y  P+ +  L   + D  Q  TQ    RP+GV LL+ G+++    LY   PSG  +E++A +IG+     + +LE   EN++E    D
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLE---ENYTEELSLD 189          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 65/173 (37.57%), Postives = 101/173 (58.38%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 581
            +YD  VT +SP G L QVEYA EAV++GS  +GLR+   +V+G   ++  +L   +  +KI  +DDH+ +  +GLTAD R+L    + E  ++   +E P  V  +   +A   Q  TQ + +RP+G+  LV G DE G  HL+   PSG ++E++A   G  SQ  + Y+E+
Sbjct:    4 RYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEK 176          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 78/211 (36.97%), Postives = 111/211 (52.61%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    +  S L   S  +KI K DDHIG+A AG  AD R L  + R +       Y  P+ V  L  ++ D  Q  TQ    RP+GV L++ G+      L+   PSG  +E++A A+G+     + YLE   E++ E    D   D  +A   ++  + L      VA V
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGIVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLE---EHYDEGMDLDEGVDLALAALASVNDDELSPEGIGVATV 217          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27
Identity = 76/194 (39.18%), Postives = 109/194 (56.19%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRE 650
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    +  S L   S  +K+ K+DDH+G A AG  AD R L  + R +       Y+ P+ V  L   + D  Q  TQ    RP+GV LL+AG++     L+   PSG   E++A AIGS     + +LE  ++  +  + +D I  AL A+ E
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYD--AGLSVDDGIDLALRALNE 201          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METPE6.184e-2838.19Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSA7_YEAST6.184e-2835.32Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA5_DROME8.077e-2835.37Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSMA_METTE1.055e-2740.80Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METMA1.055e-2739.58Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSA71_DROVI1.055e-2736.50Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSMA_HALWD1.378e-2737.70Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA73_DROME1.378e-2737.57Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSMA1_HALMA2.350e-2736.97Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSMA_HALSA4.009e-2739.18Proteasome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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