FC932496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27 Identity = 76/194 (39.18%), Postives = 109/194 (56.19%), Query Frame = 3 Query: 75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRE 650 YD +T +SP GRL+QVEYA EAVK+G+A+IG+R+ VVL + S L S +K+ K+DDH+G A AG AD R L + R + Y+ P+ V L + D Q TQ RP+GV LL+AG++ L+ PSG E++A AIGS + +LE ++ + + +D I AL A+ E Sbjct: 10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYD--AGLSVDDGIDLALRALNE 201
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27 Identity = 70/187 (37.43%), Postives = 104/187 (55.61%), Query Frame = 3 Query: 75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKD 629 YD V+T+SP G+LFQV+YA +AV+ + +++K VVLG S++ S +++ +D H+GVAIAG AD R L RSE NY TY P+P+ L ++A + T RP+G + + G+D+ G L+ PSG+ Y ++G QAAK LE+ FSE T + IK+ Sbjct: 8 YDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEK--IKFSEMTCREAIKE 192
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27 Identity = 71/209 (33.97%), Postives = 113/209 (54.07%), Query Frame = 3 Query: 75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICT 689 YD+ T +SP GRL+QVEYA+EA+ A+G+ +K +VL K S+L ++ K++ + D++ A+AGLTAD +L Y R Y T+ +P +LV ++ D Q TQ RP+GV L AG D +G L+ + PSGNY +QA +IG S + ++ + + + ++D+ D A+ +TL S+ T Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEY-------KDDINLDEASAMAVKFLSKTLDSNSLT 206
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27 Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3 Query: 72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701 +YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ KRP+GV LL G D+ G LY + PSGNY ++A IG+ S AA + L++ ++ E T + + A+ + +T+ L + +A + Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27 Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3 Query: 72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701 +YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ KRP+GV LL G D+ G LY + PSGNY ++A IG+ S AA + L++ ++ E T + + A+ + +T+ L + +A + Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26 Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3 Query: 72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701 +YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ KRP+GV LL G D+ G LY + PSGNY ++A IG+ S AA + L++ ++ E T + + A+ + +T+ L + +A + Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATL 216
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26 Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3 Query: 72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701 +YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ KRP+GV LL G D+ G LY + PSGNY ++A IG+ S AA + L++ ++ E T + + A+ + +T+ L + +A + Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATL 216
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26 Identity = 76/205 (37.07%), Postives = 107/205 (52.20%), Query Frame = 3 Query: 75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683 YD +T +SP GRL+QVEYA EAVK+G+ A+G++ VVL + S L +KIFK+D HIGVA +GL D R L R E +Y P+ V L +L D Q TQ RPYG LL+AG+ + A L+ PSG EY+A IG+ A E ++ ++ I+ + A+ +G+ S+I Sbjct: 9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDGEARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQ--EDADFSGAIRLGIKALHAATEGKLDVSAI 211
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26 Identity = 70/214 (32.71%), Postives = 117/214 (54.67%), Query Frame = 3 Query: 72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701 +YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ KRP+GV LL G D+ G LY + P+GNY ++A IG+ S AA + L++ ++ E T + + A+ + +T+ L + +A + Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26 Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 3 Query: 75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644 YD +T+SP GR+FQVEYAM+AV+ S AIG+R K VV G S+L K++F VD H+G+A+AGL AD R L+ R E N+ + +P+ L ++A T S RP+G ++ GA LY PSG + Y AIG QAAKT +E+ E T D++K+ I Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEMTCRDIVKEVAKII 198 The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bpback to top |