FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.009e-27
Identity = 76/194 (39.18%), Postives = 109/194 (56.19%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRE 650
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    +  S L   S  +K+ K+DDH+G A AG  AD R L  + R +       Y+ P+ V  L   + D  Q  TQ    RP+GV LL+AG++     L+   PSG   E++A AIGS     + +LE  ++  +  + +D I  AL A+ E
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYD--AGLSVDDGIDLALRALNE 201          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 70/187 (37.43%), Postives = 104/187 (55.61%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKD 629
            YD  V+T+SP G+LFQV+YA +AV+     + +++K  VVLG      S++  S   +++  +D H+GVAIAG  AD R L    RSE  NY  TY  P+P+  L  ++A    + T     RP+G  + + G+D+ G  L+   PSG+   Y   ++G   QAAK  LE+    FSE T  + IK+
Sbjct:    8 YDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEK--IKFSEMTCREAIKE 192          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 71/209 (33.97%), Postives = 113/209 (54.07%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICT 689
            YD+  T +SP GRL+QVEYA+EA+     A+G+ +K  +VL    K  S+L   ++   K++ + D++  A+AGLTAD  +L  Y R     Y  T+   +P  +LV ++ D  Q  TQ    RP+GV  L AG D  +G  L+ + PSGNY  +QA +IG  S + ++ + + +       ++D+  D   A+      +TL S+  T
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEY-------KDDINLDEASAMAVKFLSKTLDSNSLT 206          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+      +G+ +   V+L    +   +L       +KI+K+++ +  ++AG+T+D  VL+  +R     Y   Y+ P+P  +LV  L D  Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IG+ S AA + L++ ++   E T +  +  A+  + +T+    L +    +A +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+      +G+ +   V+L    +   +L       +KI+K+++ +  ++AG+T+D  VL+  +R     Y   Y+ P+P  +LV  L D  Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IG+ S AA + L++ ++   E T +  +  A+  + +T+    L +    +A +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+      +G+ +   V+L    +   +L       +KI+K+++ +  ++AG+T+D  VL+  +R     Y   Y+ P+P  +LV  L D  Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IG+ S AA + L++ ++   E T +  +  A+  + +T+    L +    +A +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATL 216          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.166e-26
Identity = 71/214 (33.18%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+      +G+ +   V+L    +   +L       +KI+K+++ +  ++AG+T+D  VL+  +R     Y   Y+ P+P  +LV  L D  Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IG+ S AA + L++ ++   E T +  +  A+  + +T+    L +    +A +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATL 216          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 76/205 (37.07%), Postives = 107/205 (52.20%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            YD  +T +SP GRL+QVEYA EAVK+G+ A+G++    VVL    +  S L      +KIFK+D HIGVA +GL  D R L    R E      +Y  P+ V  L  +L D  Q  TQ    RPYG  LL+AG+ +  A L+   PSG   EY+A  IG+   A     E  ++   ++     I+  + A+    +G+   S+I
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDGEARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQ--EDADFSGAIRLGIKALHAATEGKLDVSAI 211          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 70/214 (32.71%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+      +G+ +   V+L    +   +L       +KI+K+++ +  ++AG+T+D  VL+  +R     Y   Y+ P+P  +LV  L D  Q  TQ   KRP+GV LL  G D+  G  LY + P+GNY  ++A  IG+ S AA + L++ ++   E T +  +  A+  + +T+    L +    +A +
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKE-GEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATL 216          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD   +T+SP GR+FQVEYAM+AV+  S AIG+R K  VV G      S+L      K++F VD H+G+A+AGL AD R L+   R E  N+   +   +P+  L  ++A      T  S  RP+G   ++       GA LY   PSG  + Y   AIG   QAAKT +E+      E T  D++K+    I
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEMTCRDIVKEVAKII 198          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_HALS34.009e-2739.18Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSA3_DICDI5.235e-2737.43Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA4_SCHPO8.930e-2733.97Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA4_HUMAN8.930e-2733.18Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN8.930e-2733.18Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_RAT1.166e-2633.18Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE1.166e-2633.18Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSMA_METMJ1.523e-2637.07Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSA4_MACFA1.989e-2632.71Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA3_HUMAN1.989e-2638.34Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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