FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 71/193 (36.79%), Postives = 104/193 (53.89%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES-TREDLIKDALMAI 644
            YD   + +SP GR FQVEYA++AV+ G+ +IG++    VV        S+L   QK  KI  VD HIG   +GL  DGR L    R E  ++   Y++P+P+     +L    Q  T  +  RP+GV  +  G+D+ GAHLY   PSG+Y+ Y+  A G   Q+AK  LE+  ++  E  +  + +K A   I
Sbjct:    8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKII 200          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD   +T+SP GR+FQVEYAM+AV+  S AIG+R K  VV G      S+L      K++F VD H+G+A+AGL AD R L+   R E  N+   +   +P+  L  ++A      T  S  RP+G   ++       GA LY   PSG  + Y   AIG   QAAKT +E+      E T  D++K+    I
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEMTCRDVVKEVAKII 198          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD   +T+SP GR+FQVEYAM+AV+  S AIG+R K  VV G      S+L      K++F VD H+G+A+AGL AD R L+   R E  N+   +   +P+  L  ++A      T  S  RP+G   ++       GA LY   PSG  + Y   AIG   QAAKT +E+      E T  D++K+    I
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEMTCRDVVKEVAKII 198          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 644
            YD   +T+SP GR+FQVEYAM+AV+  S AIG+R K  VV G      S+L      K++F VD H+G+A+AGL AD R L+   R E  N+   +   +P+  L  ++A      T  S  RP+G   ++       GA LY   PSG  + Y   AIG   QAAKT +E+      E T  D++K+    I
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEMTCRDVVKEVAKII 198          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 74/216 (34.26%), Postives = 112/216 (51.85%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVG 704
            +  YD   + +SP GR++QVEYA EAVK+G+  +G+R+   VVL  +    SEL   +  +K+ K+DD +G A AG  AD R L  + R+        Y  P+ V  L   + D  Q  TQ    RPYG  LL+ G++     L+   PSG   E++A AIG   +  +  LE  + E+ S      L  +AL+A  E ++ + L  ++ TV+  G
Sbjct:    6 KQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSGRLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEALVAADEEIESDEL--NLVTVSEAG 219          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 74/201 (36.82%), Postives = 108/201 (53.73%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD--EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQG 662
            YD  ++ +SP GRL QVEY  EAV++G+ AI LR    +V+G   K   +L   S+ +KI  VD+H+ +A AGL AD R+L    R E  N+      P+ +  L   +A   Q  TQ    RP+GV  L+AG D  +    +Y   P+G Y  ++A AIG  S+AA+ YLE+ + E  S      L   +L+ + +T  G
Sbjct:    4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLEVVQTASG 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +D  +T +SP GRL+QVEYA +A+ QG   ++ +R K   V+    K   +L  SS    +FK+ ++IG  + G+TAD R   +  R E  N+ Y Y   +PV  L  ++AD +QV TQ +  RP G  +++ G+DE+     Y C P+G Y  ++A A G +   + ++LE++ +   + T E  ++ A+  +   L  +   S I    V      F IL
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 230          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +D  +T +SP GRL+QVEYA +A+ QG   ++ +R K   V+    K   +L  SS    +FK+ ++IG  + G+TAD R   +  R E  N+ Y Y   +PV  L  ++AD +QV TQ +  RP G  +++ G+DE+     Y C P+G Y  ++A A G +   + ++LE++ +   + T E  ++ A+  +   L  +   S I    V      F IL
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 230          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +D  +T +SP GRL+QVEYA +A+ QG   ++ +R K   V+    K   +L  SS    +FK+ ++IG  + G+TAD R   +  R E  N+ Y Y   +PV  L  ++AD +QV TQ +  RP G  +++ G+DE+     Y C P+G Y  ++A A G +   + ++LE++ +   + T E  ++ A+  +   L  +   S I    V      F IL
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 230          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 71/222 (31.98%), Postives = 115/222 (51.80%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +D  +T +SP GRL+QVEYA +A+ QG   ++ +R K   V+    K   +L  SS    +FK+ + IG  + G+TAD R   +  R E  N+ Y Y   +PV  L  ++AD +QV TQ +  RP G  +++ G+DE+     Y C P+G Y  ++A A G +   + ++LE++ +   + T E  ++ A+  +   L  +   S I    V      F IL
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRIL 230          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA3_YEAST2.598e-2636.79Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_RAT2.598e-2638.34Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_MOUSE2.598e-2638.34Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_BOVIN2.598e-2638.34Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSMA2_HALVO7.560e-2634.26Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA7_SCHPO9.874e-2636.82Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA6_RAT2.873e-2531.98Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN2.873e-2531.98Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN2.873e-2531.98Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_MOUSE4.900e-2531.98Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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