FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13391 contig Ccv1_Contig13391:128..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.248e-19
Identity = 60/195 (30.77%), Postives = 102/195 (52.31%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMAI 644
            +D  +T +SP GRL+QVEYA +A+ Q +   + L+S    V+    K   +  +      +F++   IG A+ G  AD R   +  R E  N+ Y Y   +PV  L  ++AD  QV TQ +  RP G  +++   D E G  +Y   P+G +  ++A ++G+++  A +YLE++++ N SE     L    L ++
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSV 203          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 64/212 (30.19%), Postives = 108/212 (50.94%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSA-AIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-----ENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            YD  +T +SP GRL+QVEYA +A  Q +  ++ +R K   V+    K   +L   +    IF +   IG+ + G   D R  +   ++E   + Y Y   +P   L  ++A+ +Q+ TQR++ RP GV L    +DE+ G  +Y   P+G Y  Y+A A G + Q   T LE  F     ++ +E + E +++ A+  + + L  E  K+ +
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDL 223          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 69/218 (31.65%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGL---DEKGA---HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN--FSESTREDLIKDALMAIRETLQGETLKSS 680
            M R  +D  +T +SP G L+QVEYA +AV   G   + +R K  V++   +    +L   +    ++ V+D+ GV I G   DG+ L +  R+E   Y Y Y  P+ V  L     D AQV TQ++  R  G  +   G+   DE GA    +Y   P+G      A A+G +   A  +LE++ +N  F   ++++    AL A++  L GE+L++S
Sbjct:    1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGG-AAVHACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIALAALQSAL-GESLRAS 216          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 55/213 (25.82%), Postives = 103/213 (48.36%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +D  +T +SP GR++QVEYA +A+   +  A+ ++     V+    +    L  +     ++++   +G    G+  D +   +  + E  ++ Y     +P   L  ++AD  Q  TQ +  R  G  LL    D EKG  +Y   P+G Y   +  ++G +   A ++LE++ +  SE T  + I+ A+ A++ +L G  ++S    V VV
Sbjct:    9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSL-GIDVRSKDLEVVVV 220          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 56/196 (28.57%), Postives = 92/196 (46.94%), Query Frame = 3
Query:  150 QGSAAIGLRSKTHVVLGCVNKAN-SELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +G+  +G+  K  VV     +A+   L +H+   KIFK+D+HI   IAG  AD + L +Y+++E   Y       + +       A+        S   P+ V  L+ G+DE GA +Y   PSG     +  + GS S  A   LE R+ +  E   ++ +  A+ AI+  ++ +T   +   VA V   E F +L
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAAN----ILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD--ELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRML 197          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_ENCCU (Probable proteasome subunit alpha type-1 OS=Encephalitozoon cuniculi GN=PRE5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 52/211 (24.64%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   96 WSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGV-GLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRET-LQGETLKSSICTVAVVGAGEAFH 722
            ++P G + Q+++  +  + G  A+GL++++  VL   N+  S L+  QKK+F +D       +G+T DG  +  Y+  + +         +    +   L       T    +R YGV GL +   D  G  L    P G+  E +   IG R+Q+++T LE   E + +   E+L++  +MA++    + + L      + ++ AG+A +
Sbjct:   22 FNPEGCVKQLDFIRQTTELGGTAVGLKNRSVGVLIAHNERRSRLADIQKKVFSIDRKSLFTFSGITNDGLQIVDYLIDKSVREEVIKGRAIHFLDVFEDLLRDVFERTILDGRRLYGVSGLYMTEYD--GIRLVEFNPKGHVREVKGMGIGCRAQSSRTVLEAYCEEYEKMGVEELVRIGIMALKNAHPEDDALTGENVEIWILEAGKAVY 230          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6_DROME5.248e-1930.77Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA6_YEAST6.854e-1930.19Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA1_TRYBB4.912e-1731.65Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA6_CAEEL3.520e-1525.82Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSMB_METTH3.295e-1328.57Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSA1_ENCCU3.084e-1124.64Probable proteasome subunit alpha type-1 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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