FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.052e-35
Identity = 88/211 (41.71%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G++ +  VVLG   +  S+L   +  +K++++D HIG A AGL AD RVL    R E   Y YTY  P+ V  LV  + D  QV TQ    RP+G  LL+AG+D KG  L+   PSG   E++A AIG   Q A    E  +    + T ++ I+ A+ A+ E  + ET   ++  +AVV
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYR--EDMTLQEAIELAVRALYEASREETTADNL-EIAVV 217          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.052e-35
Identity = 84/214 (39.25%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ SK  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y++ Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ +QAA++ L++ +++  ++TRE+ ++ AL  + +T+   +L S    +A V
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKD--DATREEAVELALKVLTKTMDSTSLTSEKLELAEV 215          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 83/214 (38.79%), Postives = 132/214 (61.68%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ SK  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y+++Y+ P+PV +LV  L D  Q  TQ     P+GV  L AG D+  G  L+ + PSGNY  ++A AIG+ +QAA++ L++ +++  + TRE+ ++ AL  + +T+   +L S    +A V
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKD--DITREEAVQLALKVLSKTMDSTSLTSEKLELAEV 215          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.520e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.985e-34
Identity = 88/215 (40.93%), Postives = 129/215 (60.00%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 713
            YD  +T +SP GRLFQV+YA EAVK+G+ A+G++ K  VVL    +  S+L   +  +KIF++DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q+ TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E ++ +  E T E+ IK A++A+ + ++  + +S    VAV+   E
Sbjct:   10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRD--EMTLEEAIKLAVLALSKIMEEPSPES--IEVAVISVKE 219          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METKA1.052e-3541.71Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSA4_ARATH1.052e-3539.25Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA4_PETHY3.999e-3538.79Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSMA_SULIY1.520e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.520e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.520e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL1.520e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK1.520e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA1.520e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_THESM1.985e-3440.93Proteasome subunit alpha OS=Thermococcus sibiricus... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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