FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 83/211 (39.34%), Postives = 126/211 (59.72%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPV---GRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL++K  VVL    +  S L   S  +KI ++D+HIG A++GL AD R L  + R E  N+ ++Y  P+ V    + +  LA +     + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+ ++    E T ++    AL  +++ ++ +   +++
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN--KELTLQEAETIALSILKQVMEEKVTPNNV 213          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 86/225 (38.22%), Postives = 129/225 (57.33%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+ +F    + T ++    A+  +++ ++ +   ++   V +     A+H+
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFN--KDITLQEAETIAVSILKQVMEEKVTPNN---VDIAKVAPAYHL 224          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 81/179 (45.25%), Postives = 109/179 (60.89%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 587
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+ +F
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQF 183          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 83/211 (39.34%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL++K  VVL    +  S L   S  +KI ++D+HIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++    AIGS S+ A + L+ +F    + T ++    AL  +++ ++ +   +++
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFN--KDLTLQEAETIALSILKQVMEEKVTPNNV 213          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 77/194 (39.69%), Postives = 114/194 (58.76%), Query Frame = 3
Query:   87 VTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG 662
            +TT+SP+GRL Q+EYA  A  +G+ A+G+++   VV+    K  S L+      K+F +DDH+G   +G+  D RVL    R  C  Y  TY  P+P+ +LV Q++   Q  TQ    RP+G  LLVAG D +G HLY   PSG ++ ++A +IG  S  A+T+LE+R+ N  E   ED +  AL+ ++E   G
Sbjct:    8 LTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTN--EMEIEDAVHTALLTLKEGFDG 199          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 668
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF +DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E  + +  +  ++D IK A++A+ +TL+  T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRD--DIGKDDAIKLAILALAKTLEEPT 206          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 668
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF +DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E  + +  +  ++D IK A++A+ +TL+  T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRD--DIGKDDAIKLAILALAKTLEEPT 206          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A AGLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G   LY   PSG Y  ++A AIG  ++  + +LE+ +   + S  ++ IK A+ A+ E +Q
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQ 202          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.287e-33
Identity = 83/222 (37.39%), Postives = 128/222 (57.66%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+ P+PV +LV + A   Q  TQ    RP+GV LLVAG D+KG  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +GE + S    +  +GA + F +L
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGE-ISSKNIEIGKIGADKVFRVL 222          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.195e-33
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            +YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+H+ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  ++  + +LE+ + + + ++  D IK A+ A+ E +Q
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQ 202          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5_ORYSJ3.386e-3439.34Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5B_ARATH3.386e-3438.22Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH7.542e-3445.25Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SOYBN9.851e-3439.34Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA2_TRYBB9.851e-3439.69Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSMA_THEK11.287e-3342.50Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO1.287e-3342.50Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSA7L_MOUSE1.287e-3339.50Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA2A_ARATH1.287e-3337.39Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA7_CARAU2.195e-3339.20Proteasome subunit alpha type-7 OS=Carassius aurat... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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