FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13391 contig Ccv1_Contig13391:128..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.054e-31
Identity = 82/227 (36.12%), Postives = 131/227 (57.71%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHM 228          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.054e-31
Identity = 76/210 (36.19%), Postives = 118/210 (56.19%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   Q   K+  +  HIG+  +G+  D RVL R  R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+AG DE   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.054e-31
Identity = 85/223 (38.12%), Postives = 126/223 (56.50%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVL-SRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            ++Y   +TT+SP+G+L Q+EYA+ AV QG  A+G+++   +VL    K++S L+  S   KI  +  +IG+  +G+  D RVL  R  +     Y   Y    P   LV  +A   Q  TQ    RPYGV LL+AG DE G  LY   PSG+YF ++A AIG  +  AKT+LE+R+    E   ED +  AL+ ++ET++GE +      + +VG   A H+L
Sbjct:    3 DRYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLE--LEDAVHIALLTLKETIEGE-MNGDTIEIGIVGP-PADHLL 221          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 79/212 (37.26%), Postives = 123/212 (58.02%), Query Frame = 3
Query:   72 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA--HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICT 689
            +YD  +T +SP G LFQVEYAMEAV++G+AA+G+R    VVLG   K+  +L   +  +KI  +DDHI +A AGL AD RVL    R EC ++  T E P+ V  +   +A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+   N+ E++ ++ +K A+ A+ E ++  G+ ++ ++ T
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEK---NYKETSGQETVKLAIRALLEVVESGGKNIEVAVMT 211          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.576e-31
Identity = 81/209 (38.76%), Postives = 115/209 (55.02%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTV 692
            YD  +T +SP GRL+QVEYA EAV++G+ AIG+  K  VVL    +  S+L   +  +KIF++DDH+  A +GL AD RVL    R E   Y  TY   + +  L  ++ D  Q  TQ    RP+GV LL+AG+D+  A L+   PSG   EY+A AIGS        LE+ + ++ +     +L   AL    E ++ E +   I TV
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITV 217          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.576e-31
Identity = 79/221 (35.75%), Postives = 122/221 (55.20%), Query Frame = 3
Query:   60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAG 710
            M   +YD+  T +SP GRL+QVEYA+E++     AIG+ +   +VL    K  S L    +  +K++K++D I VA+AGLTAD  +L    R    NY  TY   +PV  LV +L+D  Q  TQ    RP+GV  + AG D++ G  LY + PSGNY  ++A ++G+ + AA+T L+  +++  +   +D I+ AL  + +T     L       A +  G
Sbjct:    1 MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKG 219          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.019e-30
Identity = 76/198 (38.38%), Postives = 115/198 (58.08%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 659
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ   +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ +   E+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.019e-30
Identity = 78/215 (36.28%), Postives = 124/215 (57.67%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGA 707
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   S    +F +  +IG+   G+TAD R L +  R++   + +TY   +PV  L   +ADK+QV TQ ++ RP GV  +V G+DE+   L Y C P+G+++ ++A + G + Q A  +LE++ +     T ++ ++ A+ A++  LQ E  K++   V VV A
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQ-EDFKATEIEVGVVRA 222          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30
Identity = 87/214 (40.65%), Postives = 118/214 (55.14%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGA 707
            YD  +T +SP GRLFQVEYA EAVK+GS A+GL+    V+L    K  S+L      +KI  +DD++    +GL AD RVL  + R        TY S + +  LV ++AD+ Q  TQ    RPYGV L+ AG+D+ G  L+   P+G   EY+A AIGS   A  ++LE+ + E  SE     L   AL A  E  +GE LK+       VG+
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLE--EGEELKAPEIASITVGS 219          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30
Identity = 82/206 (39.81%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN + S   +L   AL    E L+ E +  +I
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAI 215          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5_BOVIN2.054e-3136.12Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA2_XENLA2.054e-3136.19Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2_NEUCR2.054e-3138.12Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA7_SOLLC2.683e-3137.26Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSMA_METJA4.576e-3138.76Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSA4_YEAST4.576e-3135.75Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA7_CHICK1.019e-3038.38Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA6A_ARATH1.019e-3036.28Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSMA_THEVO1.331e-3040.65Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_METMP1.331e-3039.81Proteasome subunit alpha OS=Methanococcus maripalu... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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