FC932496

Overview
NameFC932496
Unique NameFC932496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13391 contig Ccv1_Contig13391:128..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 77/222 (34.68%), Postives = 126/222 (56.76%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+  +PV +LV + A   Q  TQ    RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I  + ++ +   F +L
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVL 222          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 77/222 (34.68%), Postives = 126/222 (56.76%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+  +PV +LV + A   Q  TQ    RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I  + ++ +   F +L
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVL 222          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 82/220 (37.27%), Postives = 119/220 (54.09%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            YD  +T +SP GRLFQVEYA EAVK+GS A+G++ K  V L    K  S L   +  +KI  +DD +    +GL AD RVL  + R        TY S + +  LV ++AD+ Q  TQ    RPYGV ++ AGLD  G  L+   P+G   EY+  +IG+       YLE+ + EN SE   ++ I+  + A++  +  E+       +A +  GE FH+
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLDSIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSE---DEAIRMGIAALKSAVADESSMKE-PEIASIKMGETFHV 223          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 81/206 (39.32%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN + +   +L   AL    E L+ E +  +I
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEELKPENIDMAI 215          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 82/205 (40.00%), Postives = 113/205 (55.12%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 683
            YD  +T +SP GRLFQVEYA EAVK+G+ AIG++ K  V+L    +  S+L      +KI+K+D+HI  A +GL AD RVL    R E      TY+ P+ V  L  ++ D  Q  TQ    RP+GV LL+AG+DE    LY   PSG   EY+A AIG    A   + E+ +       R+DL  D  M +     G +++S +
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEY-------RDDLSFDDAMVLGLVAMGLSIESEL 204          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 78/213 (36.62%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   +    +F +  ++G+   G+TAD R L +  R+E   + + Y   +PV  L   +ADK+QV TQ ++ RP GV  ++ G+D EKG  L+   P+G++F ++A + GS+ Q A  +LE++ +N    + E+ ++ A+ A++  LQ E  K+S   V VV
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQ-EDFKASEIEVGVV 220          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 80/200 (40.00%), Postives = 111/200 (55.50%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 668
            YD  +T +SP GRL+QVEYA EAVK+G+ A+G+++   VVL    + +S+L  SS  +KIFK+D+HIGVA +GL  D R L    R EC     +Y+  + V  L  +L D  Q  TQ    RPYG  LL+AG+ +  + L+   PSG   EY+A  IG    AA    E       E T +  +KDA++   + L   T
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFE------EEYTADLALKDAILLGLKALHSAT 202          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 78/213 (36.62%), Postives = 123/213 (57.75%), Query Frame = 3
Query:   75 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGL-DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 701
            Y+  +T +SP GRLFQVEYA +AVK  G  +IG+R K  + +    K   +L  +     +F +  ++G+   G+TAD R L +  R+E   + +TY   +PV  L   +ADK+QV TQ ++ RP GV  +V G+ DE G  LY   P+G+YF ++A + G + Q A  +LE++ +N    T E+ ++ A+ A++  LQ E  K++   V VV
Sbjct:    9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQ-EDFKATEIEVGVV 220          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 79/228 (34.65%), Postives = 127/228 (55.70%), Query Frame = 3
Query:   66 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHI 725
            R++YD  V T+SP GRLFQVEYA+EA+K G   IG++ +  VVL    +  S L   S  +K+ ++D H+  A++GL AD R +  + R E  N+ + Y  P+ V   V  + D A      +   +    RP+GV LL+AG+DEKG  LYY+ PSG + ++ A AIG+ S+ A+T L+ ++      T  +  K AL  +++ ++     +++    +  A + F I
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYALEAIKLG---IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYS--KTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKI 227          
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 77/197 (39.09%), Postives = 112/197 (56.85%), Query Frame = 3
Query:   69 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRET 653
            + Y   +TT+SP+G+L Q+EYA+ AVK G  ++GLR+K  VVL   N   S L+  Q K+ ++  HIG   +G+  D R+L +  R   + Y   Y   +P  +LV  +A   Q  TQ    RP+G  LL+AG D+  G  L + C PSG YF ++A A+G     AKT+LE+RF    E   +D I  AL+ +RE+
Sbjct:    3 DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALE--LDDGIHTALLTLRES 196          
The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_ORYSJ2.271e-3034.68Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI2.271e-3034.68Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_PICTO2.966e-3037.27Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_METM72.966e-3039.32Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_ARCFU2.966e-3040.00Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSA6_TOBAC2.966e-3036.62Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSMA_METB63.874e-3040.00Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA6_SOYBN3.874e-3036.62Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA5_DICDI3.874e-3034.65Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA2_CAEEL3.874e-3039.09Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC34209C02EF PostHarveN Citrus clementina cDNA clone C34209C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bp
GACTTGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAA
ACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAG
CCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGC
AAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGC
TGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTT
CAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACG
GCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTAC
ACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGA
CAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTG
GCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAAC
TGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCG
ATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAG
AATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAA
ACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAGTTGCTGTGGT
AGGAGCTGGGGAAGCATTTCATATTTTAGA
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