FC932499

Overview
NameFC932499
Unique NameFC932499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 58/243 (23.87%), Postives = 105/243 (43.21%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA-AAVENYISILDVETQVCRLKLQGHKNQVHSVCW--------------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +W  E+   + +L+  T  + DV F      LA+ SAD ++++WD +     ++T  GH   V S+ F P+  D + S   +  I+ W +  G C   +       +M      G I A  + +  I +    ++ C+++L+ H++ V  + W                    +  G +LAS S D+ +R+W +   S G C+  LS   N      FHP    L+     +T+ +W++   R
Sbjct:  134 IWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPA-GDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDV---SVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKR 372          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1_CHICK (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F H  K  LL SC  +  I+ W      C           + +   P    I++A+ +  I + +V+T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL
Sbjct:  111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFDHTGK--LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAEL 272          

HSP 2 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 56/243 (23.05%), Postives = 103/243 (42.39%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY---------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +W  E+   + TL+  T  + D+ F  +   LA+ SAD T+++WD +  +  +RT  GH   V S+   P+  D + S   +  I+ W +  G C   F       +M    + G ++A+ + +  + +  V T+ C+ +L+ H++ V  + W     Y                     L+   D+ +++W I   S G C+  L    N     +FH     +L     +TL +W+    R
Sbjct:  134 VWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVAIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISEATGSETKKSGKPGPFLLSGSRDKTIKMWDI---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDFKNKR 371          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 51/167 (30.54%), Postives = 79/167 (47.31%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            +T V F P  S + ++S D T++VWD E  D+  RT  GH+ ++  + F  S + LL SC  +  I+ W      C           + +   P    I++A+ +  I + +V+T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL
Sbjct:  111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSIQDIPFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAEL 272          

HSP 2 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 57/243 (23.46%), Postives = 103/243 (42.39%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY---------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +W  E+   + TL+  T  I D+ F  S   LA+ SAD T+++WD +  +  +RT  GH   V S+   P+  D + S   +  I+ W +  G C   F       +M    + G ++A+ + +  + +  V T+ C+ +L+ H++ V  + W     Y                     L+   D+ +++W +   S G C+  L    N     +FH     +L     +TL +W+    R
Sbjct:  134 VWDYETGDFERTLKGHTDSIQDIPFDHSGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVAIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 52/167 (31.14%), Postives = 79/167 (47.31%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F  S + LL SC  +  I+ W      C           + +   P    I++A+ +  I + +V+T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL
Sbjct:  111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVEDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAEL 272          

HSP 2 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 56/243 (23.05%), Postives = 103/243 (42.39%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY---------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +W  E+   + TL+  T  + D+ F  S   LA+ SAD T+++WD +  +  +RT  GH   V S+   P+  D + S   +  I+ W +  G C   F       +M    + G ++A+ + +  + +  V T+ C+ +L+ H++ V  + W     Y                     L+   D+ +++W +   S G C+  L    N     +FH     +L     +TL +W+    R
Sbjct:  134 VWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVAIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 51/167 (30.54%), Postives = 79/167 (47.31%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F  S + LL SC  +  I+ W      C           + +   P    +++A+ +  I + +V+T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL
Sbjct:  111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFDHSGK-LLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAEL 272          

HSP 2 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 56/243 (23.05%), Postives = 102/243 (41.98%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY---------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +W  E+   + TL+  T  + D+ F  S   L + SAD T+++WD +  +  +RT  GH   V S+   P+  D L S   +  I+ W +  G C   F       +M    + G ++A+ + +  + +  V T+ C+ +L+ H++ V  + W     Y                     L+   D+ +++W +   S G C+  L    N     +FH     +L     +TL +W+    R
Sbjct:  134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVAIMPN-GDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 53/168 (31.55%), Postives = 78/168 (46.43%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F H  K  LL SC  +  I+ W      C           + +   P    I++A+ +  I + +V T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL
Sbjct:  111 VTRVIFHPVFSVIVSASEDATIKVWDHETGDFE-RTLKGHTDSVQDISFDHTGK--LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASSSNDQTVRVWVVAT---KECKAEL 272          

HSP 2 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 56/238 (23.53%), Postives = 102/238 (42.86%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGR--------------ILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 649
            LW  + F    T+      ++ V   P+   + ++S D+T+++W+     Y ++TFTGH   V  +   P+++  L+ S  N+  +R W +    C         V +C S A +      L                +L+ + +  I + DV   +C + L GH N V  V  +  G+Y+ S +D+  +R+W         C   LS   +   S  FH T P ++     +T+++W
Sbjct:  176 LWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVAT-GYCVKTFTGHREWVRMV--RPNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGVLVHPGGKYIVSCADDKTLRIWDY---KNKRCTKTLSAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          

HSP 3 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 56/243 (23.05%), Postives = 105/243 (43.21%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAV-ENYISILDVETQVCRLKLQGHKNQVHSVCW--------------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +W  E+   + TL+  T  + D+ F  +   LA+ SAD T+++WD +  +  +RT  GH   V S+   P+  D + S   +  I+ W +  G C   F       +M    + G ++A++  +  + +  V T+ C+ +L+ H++ V  + W                       G +L S S D+ +++W +   S G C+  L    N     + HP    ++     +TL +W+    R
Sbjct:  134 VWDHETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVAIMPN-GDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLIASSSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTILEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---SIGMCLMTLVGHDNWVRGVLVHPGGKYIVSCADDKTLRIWDYKNKR 371          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: FBXW7_MOUSE (F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 48/156 (30.77%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   98 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 559
            + + S DRT++VW+ E  +  + T  GH++TV  +  H   E  + S   ++ +R W I  G C  V      A + +++  R  R+++ A +  + + D ET+ C   LQGH N+V+S+ ++  G ++ S S D  +RVW + +G+   CIH L+
Sbjct:  356 IISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGN---CIHTLT 500          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: FBXW7_HUMAN (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 48/156 (30.77%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   98 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 559
            + + S DRT++VW+ E  +  + T  GH++TV  +  H   E  + S   ++ +R W I  G C  V      A + +++  R  R+++ A +  + + D ET+ C   LQGH N+V+S+ ++  G ++ S S D  +RVW + +G+   CIH L+
Sbjct:  434 IISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGN---CIHTLT 578          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 57/191 (29.84%), Postives = 88/191 (46.07%), Query Frame = 2
Query:    8 WCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAVENY-ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--------GSKGECI 547
            W   SFT     +     + DV  SP     A+ S DRT R+W  +   Y LR + GH   V  + FHP+  + L +   +  +R WS   G+   +F    G    + F P  G+ LA+A E+  + + D+ +     +L+GH + + S+ ++     +AS S D  VRVW I S        GS GE +
Sbjct:  369 WDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDR-TYPLRIYAGHLADVDCVKFHPN-SNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPN-GKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELV 556          

HSP 2 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 41/132 (31.06%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   71 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSV 454
            V+F P+ + LAT S D+TVR+W  +  + S+R FTGH   V+SL F P+ +  L S   +  ++ W + +G+   +FK   G     T + F P  G I +A+++N + + D+ +  C     G   ++  V
Sbjct:  432 VKFHPNSNYLATGSTDKTVRLWSAQQGN-SVRLFTGHRGPVLSLSFSPNGK-YLASAGEDQRLKLWDLASGT---LFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGELVGV 558          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: LIS1B_DANRE (Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1b1b PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F  + + LL SC  +  I+ W      C           + +   P    I++A+ +  + + +V T  C     GH+  V  V  N  G  LAS S D+ VRVW + +    EC  EL
Sbjct:  111 VTRVIFHPVFSLMVSASEDATIKVWDYEAGDFE-RTLKGHTDSVQDISFDQTGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTMKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLLASCSNDQTVRVWVVAT---KECKAEL 272          

HSP 2 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 60/245 (24.49%), Postives = 107/245 (43.67%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AVENYISILDVETQVCRLKLQGHKNQVHSVCW--------------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENR 667
            +W  E+   + TL+  T  + D+ F  +   LA+ SAD T+++WD +  +  +RT  GH   V S+   P+  D + S   +  ++ W +  G C   F       +M    + G +LA+ + +  + +  V T+ C+ +L+ H++ V  + W                       G +L S S D+ +++W I   S G C+  L    N     +FHP      V+ C +  TL +W+    R
Sbjct:  134 VWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVAIMPN-GDHIVSASRDKTMKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTISEATGSENKKSGKPGPFLLSGSRDKTIKMWDI---STGMCLMTLVGHDNWVRGVLFHP--GGRFVVSCADDKTLRIWDYKNKR 371          
The following BLAST results are available for this feature:
BLAST of FC932499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
LIS1_DROME8.298e-1423.87Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
LIS1_CHICK1.084e-1331.55Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PONAB1.415e-1330.54Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_BOVIN1.415e-1331.14Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MACFA1.849e-1330.54Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1A_DANRE3.153e-1331.55Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1... [more]
FBXW7_MOUSE3.153e-1330.77F-box/WD repeat-containing protein 7 OS=Mus muscul... [more]
FBXW7_HUMAN3.153e-1330.77F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
TAF5L_MOUSE4.118e-1329.84TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
LIS1B_DANRE5.379e-1330.54Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1... [more]

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Properties
Property NameValue
Genbank descriptionC34209C06EF PostHarveN Citrus clementina cDNA clone C34209C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932499 ID=FC932499; Name=FC932499; organism=Citrus clementina; type=EST; length=707bp
TGTGTTATGGTGCACGGAGTCTTTTACGGTAAAGTCTACACTTGAGGAAC
GTACTCAATGGATAACTGATGTCCGTTTCAGTCCAAGCCTATCAAGGCTG
GCTACATCTTCAGCTGATAGAACTGTCAGGGTTTGGGATACTGAAAATCC
TGACTATTCACTTCGTACTTTTACGGGTCATTCTACAACTGTTATGTCTT
TGGATTTCCATCCTAGTAAAGAAGACCTTCTCTGTTCTTGTGATAATAAT
AGTGAGATACGATACTGGAGTATCAACAATGGTAGCTGTGCTGGAGTTTT
CAAGTGTCAGAGTGGTGCAACCCAGATGAGATTTCAACCTCGTCTTGGAA
GGATTCTTGCTGCAGCCGTAGAGAACTATATCTCTATACTTGATGTAGAG
ACCCAAGTTTGCAGACTTAAATTACAGGGTCATAAAAATCAAGTTCATTC
TGTGTGCTGGAACACTTCGGGTGAGTATCTGGCATCAGTGAGTGACGAAT
TAGTCAGGGTGTGGAGCATTGGTTCTGGCAGCAAAGGGGAATGCATTCAT
GAGTTAAGCTGTACTGGCAACAAATTCCATAGCTGTGTTTTCCATCCCAC
ATTCCCCTCACTATTGGTTATCGGCTGTTATGAGACTTTGGAGCTCTGGA
ACATGACTGAAAACAGACACTGACTCTGAGTGCACACGACAAGCTTGTAT
CATCTTT
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