FC932499

Overview
NameFC932499
Unique NameFC932499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/178 (28.09%), Postives = 86/178 (48.31%), Query Frame = 2
Query:   14 TESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ----MRFQPRLGRILAA-AVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 529
            T +F     L   T+ +  V+FSP  S LA+ SADRTV +WD       + T  GHS  V  + ++P+   L  + D++S ++ W    G+C    +  +G T       F    G +LA+ + +  + + DV +  C  ++  H + V S  ++  G  + + S D L+R+W   +G
Sbjct:   27 TVAFRCTHALSGHTKAVAAVKFSPDGSLLASGSADRTVALWDAAT-GARVNTLAGHSCGVSDVAWNPNGRYLATAADDHS-LKLWDAETGAC---LRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTG 199          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 62/225 (27.56%), Postives = 102/225 (45.33%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAVENY-ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-----SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-----CYETL 640
            LW         +L   T  +  VRF+ +   +   S   ++RVWD E     LRT  GH   V SLDFHP   D + S   ++ I+ W +    C   +K  + A + +RF P  G+ LA+A +++ + + D+       +L  HK  V+ + ++ +   LAS S D  VR W +        ++GE I   +   +    C+F     +L V G     C++T+
Sbjct:   47 LWSVNKPNCIMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRVWDLEAAKI-LRTLMGHKANVCSLDFHP-YGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPD-GKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIFCGGRDALRVYGWEPDQCFDTV 268          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: CIAO1_MOUSE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 60/216 (27.78%), Postives = 100/216 (46.30%), Query Frame = 2
Query:    5 LWCTE--SFTVKSTLEERTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS 583
            +W TE  S+  KS L E  Q  +  V +SP  + LA++S D T  +W     D+  + T  GH   V S+ + PS  +LL +C  +  +  W ++      C  V    +     + + P    + +A+ ++ + +   E    VC   L+GH++ V S+ ++ SG+ LAS SD+  VR+W              GS    +CI    CT + FH+
Sbjct:   42 IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHT 252          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: CIAO1_HUMAN (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Homo sapiens GN=CIAO1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 61/216 (28.24%), Postives = 100/216 (46.30%), Query Frame = 2
Query:    5 LWCTE--SFTVKSTLEERTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS 583
            +W TE  S+  KS L E  Q  +  V +SP  + LA++S D T  +W     D+  + T  GH   V S+ + PS  +LL +C  +  +  W ++      C  V    +     + + P    + +A+ ++ + +   E    VC   L+GH++ V S+ ++ SG+ LAS SD+  VR+W              GS    +CI    CT + FHS
Sbjct:   42 IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHS 252          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: TBL1Y_HUMAN (F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 55/206 (26.70%), Postives = 94/206 (45.63%), Query Frame = 2
Query:    2 VLWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM---------RFQPRLGRILAAA-VENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 586
            ++W   +   K      +    DV +  +++  A+ S D  + V      D+ ++TF GH+  V ++ + PS   LL SC ++  ++ WS+   +C    +  S                 P    +LA+A  ++ + + DVE  VC   L  H+  V+SV ++  G+YLAS S D+ V +W+  SGS    +H    TG  F  C
Sbjct:  301 IIWDAHTGEAKQQFPFHSAPALDVDWQNNMT-FASCSTDMCIHVCRL-GCDHPVKTFQGHTNEVNAIKWDPSGM-LLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGS---LVHSYQGTGGIFEVC 500          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NUDF_GIBZE (Nuclear distribution protein PAC1 OS=Gibberella zeae GN=PAC1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 54/178 (30.34%), Postives = 81/178 (45.51%), Query Frame = 2
Query:   32 KSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINN------------GSCAGVFKCQSGATQMRFQPRLGRILAAAVENY-ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-SDELVRVWSI 520
            +  L+     I  V F P  S +A+   D T+++WD E  +   RT  GH+  V+ LD+  P    LL SC ++  I+ W   N             S + V    SGA      P  G +LA+A  +  + I DV T  C   ++GH + +  V  +  G+YL S  +D  VR+W I
Sbjct:  111 RHVLQSHRTPINCVAFHPIFSSIASGDEDATIKIWDWEFGELE-RTVKGHTKAVLDLDYGGPKGHTLLASCSSDLTIKLWDPANEYQNIRTLPGHDHSVSAVRFIPSGAPG---APLSGNLLASASRDVTVRIWDVTTGYCVKTIRGHADWIRDVSPSLDGKYLLSTGNDRTVRLWDI 284          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: FBXW7_DROME (F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   98 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 556
            + + S DRT++VWD ++    + T  GH++TV  +  H SK   + S   ++ +R W I  GSC  V      A + +++  +L  I++ A +  + I   E Q C   LQGH N+V+S+ ++  G ++ S S D  +RVW + +G+   C H L
Sbjct: 1048 IISGSTDRTLKVWDMDS-GACVHTLQGHTSTVRCMHLHGSK---VVSGSRDATLRVWDIEQGSCLHVLVGHLAAVRCVQYDGKL--IVSGAYDYMVKIWHPERQECLHTLQGHTNRVYSLQFD--GLHVVSGSLDTSIRVWDVETGN---CKHTL 1191          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: CIAO1_RAT (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 59/216 (27.31%), Postives = 100/216 (46.30%), Query Frame = 2
Query:    5 LWCTE--SFTVKSTLEERTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS 583
            +W TE  S+  KS L E  Q  +  V +SP  + LA++S D T  +W     D+  + T  GH   V S+ + PS  +LL +C  +  +  W ++      C  V    +     + + P    + +A+ ++ + +   E    VC   L+GH++ V S+ ++ SG+ LAS SD+  VR+W              GS    +C+    CT + FH+
Sbjct:   42 IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYQEEGDDWVCCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCV----CTLSGFHT 252          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 50/184 (27.17%), Postives = 86/184 (46.74%), Query Frame = 2
Query:   50 RTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVW------SIG-SGSKGECIHELSCTGN 571
            R  ++  + FSP    L T + DR +++WD  T+   Y    F+GH   + SLDF  +    + S   +   R W +  G C    + ++G T +   P    I   +++  I +  V   +   +L+GHK  V+S+ ++     L S S D+ ++VW      S+G S  K E I + + TG+
Sbjct:  359 RDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRY---VFSGHEQDIYSLDFSHNGR-FIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVE-RLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGH 537          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 46/164 (28.05%), Postives = 75/164 (45.73%), Query Frame = 2
Query:   32 KSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 520
            +S+  E   ++  V FSP    LAT   D+ +R+WD        R  TGH   + SLDF    + L+ S   +  +  W +  G    +     G T + F P    I A +++  I I      +   +L GH+  V+SV ++  G+YL S S D  +++W +
Sbjct:  327 ESSKREGDLYVRSVAFSPDGKYLATGVEDQQIRIWDIAQKRV-YRLLTGHEQEIYSLDFSKDGKTLV-SGSGDRTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVE-QLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWEL 487          
The following BLAST results are available for this feature:
BLAST of FC932499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
MUT11_CHLRE7.767e-1228.09Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
KTNB1_XENTR7.767e-1227.56Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
CIAO1_MOUSE1.014e-1127.78Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_HUMAN1.014e-1128.24Probable cytosolic iron-sulfur protein assembly pr... [more]
TBL1Y_HUMAN1.325e-1126.70F-box-like/WD repeat-containing protein TBL1Y OS=H... [more]
NUDF_GIBZE1.325e-1130.34Nuclear distribution protein PAC1 OS=Gibberella ze... [more]
FBXW7_DROME1.325e-1131.61F-box/WD repeat-containing protein 7 OS=Drosophila... [more]
CIAO1_RAT1.325e-1127.31Probable cytosolic iron-sulfur protein assembly pr... [more]
TUP11_SCHPO1.730e-1127.17Transcriptional repressor tup11 OS=Schizosaccharom... [more]
TUP12_SCHPO2.260e-1128.05Transcriptional repressor tup12 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC34209C06EF PostHarveN Citrus clementina cDNA clone C34209C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932499 ID=FC932499; Name=FC932499; organism=Citrus clementina; type=EST; length=707bp
TGTGTTATGGTGCACGGAGTCTTTTACGGTAAAGTCTACACTTGAGGAAC
GTACTCAATGGATAACTGATGTCCGTTTCAGTCCAAGCCTATCAAGGCTG
GCTACATCTTCAGCTGATAGAACTGTCAGGGTTTGGGATACTGAAAATCC
TGACTATTCACTTCGTACTTTTACGGGTCATTCTACAACTGTTATGTCTT
TGGATTTCCATCCTAGTAAAGAAGACCTTCTCTGTTCTTGTGATAATAAT
AGTGAGATACGATACTGGAGTATCAACAATGGTAGCTGTGCTGGAGTTTT
CAAGTGTCAGAGTGGTGCAACCCAGATGAGATTTCAACCTCGTCTTGGAA
GGATTCTTGCTGCAGCCGTAGAGAACTATATCTCTATACTTGATGTAGAG
ACCCAAGTTTGCAGACTTAAATTACAGGGTCATAAAAATCAAGTTCATTC
TGTGTGCTGGAACACTTCGGGTGAGTATCTGGCATCAGTGAGTGACGAAT
TAGTCAGGGTGTGGAGCATTGGTTCTGGCAGCAAAGGGGAATGCATTCAT
GAGTTAAGCTGTACTGGCAACAAATTCCATAGCTGTGTTTTCCATCCCAC
ATTCCCCTCACTATTGGTTATCGGCTGTTATGAGACTTTGGAGCTCTGGA
ACATGACTGAAAACAGACACTGACTCTGAGTGCACACGACAAGCTTGTAT
CATCTTT
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