FC932499

Overview
NameFC932499
Unique NameFC932499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NUDF_ASPFU (Nuclear distribution protein nudF homolog OS=Aspergillus fumigatus GN=nudF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 53/177 (29.94%), Postives = 83/177 (46.89%), Query Frame = 2
Query:   41 LEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINNG------------SCAGVFKCQSGATQMRFQPRLGRIL-AAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELV-RVWSIGS 526
            LE     +T V F P  S LA+ S D T+++WD E  +   RT  GH+  V+ +D+  P    LL SC ++  I+ W  ++             S + V    SGA      P  G +L +A+ +  + I DV T  C   L GH + V +V  +  G +L +  D+ + R+W + S
Sbjct:  111 LEGHRNPVTCVAFHPVFSSLASGSDDTTIKIWDWELGELE-RTVKGHTKAVLDVDYGGPRGGTLLASCSSDLTIKLWDPSDNYKNIRTLPGHDHSVSSVRFIPSGAAG---SPMSGNLLVSASRDKTLRIWDVTTGYCVKTLSGHVDWVRAVAPSIDGRFLLAAGDDRIPRLWDLSS 283          

HSP 2 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 60/251 (23.90%), Postives = 107/251 (42.63%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-------KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISIL-DVETQVCRLKLQGHKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 661
            +W  E   ++ T++  T+ + DV +      + LA+ S+D T+++WD  +   ++RT  GH  +V S+ F PS         +LL S   +  +R W +  G C           +       GR L AA ++ I  L D+ +   +    GH++ +  V                       ++S E+ A+ S D+ +R+W     S+G  I  L    N   +  FHP    LL +   +T+  W++T+
Sbjct:  141 IWDWELGELERTVKGHTKAVLDVDYGGPRGGTLLASCSSDLTIKLWDPSDNYKNIRTLPGHDHSVSSVRFIPSGAAGSPMSGNLLVSASRDKTLRIWDVTTGYCVKTLSGHVDWVRAVAPSIDGRFLLAAGDDRIPRLWDLSSAETKSTFLGHEHVIECVAIAPAASYPHLAVLSGLKKPPPASSSAEFFATGSRDKTIRLWD----SRGNLIKTLVGHDNWVRALAFHPGGKHLLSVADDKTIRCWDLTQ 387          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 49/185 (26.49%), Postives = 80/185 (43.24%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHE 553
            +W         +L   T  I  ++ S     +   S   ++RVWD E     LRT  GH   + SLDFHP     + S   +++I+ W +    C   +K  + A + +RF P    + +AA ++ + + D+       +  GH   V+ V ++ S   LAS  SD  +R W +       CI E
Sbjct:   47 VWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWDLEAAKI-LRTLLGHKANICSLDFHP-YGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEE 229          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 58/222 (26.13%), Postives = 106/222 (47.75%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETLELWNM 655
            +W  ++     TL     ++  V F   L  + ++S D+T+R+W+ +N    +   TGH+  VM   FHP+ +DL+ S   +  IR W I     +G+ K  S      F+ ++     +A +N   +LD     C +K  L+GH   V+   ++ +   + S SD+  V++W + +    E     +C G  N   S +FHP    ++ +G  +TL +W++
Sbjct:   79 VWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQNRK-EIACLTGHNHFVMCAQFHPT-DDLIVSASLDETIRIWDI-----SGLRKRHSAPGTSSFEEQM-----SAQQN---LLDGSLGDCVVKFILEGHTRGVNWASFHPTLPLIVSGSDDRQVKLWRMSATKAWEVD---TCRGHTNNVDSVIFHPHQNLIISVGEDKTLRVWDL 282          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 49/174 (28.16%), Postives = 77/174 (44.25%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGAT--QMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 529
            S+LE  ++ +  V FSP+   LA+ S D TVR WD  TE P +   T  GH   V+S+ + P  + L   C  N +I  W  + G     + AG  K  +G +   +   P    + +++ +  + I D     C   L GH   V  + W   G   ++  D  ++VW    G
Sbjct:  108 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHF---TCKGHRHWVLSISWSPDGKKLASGC-KNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDG 277          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NLE1_HUMAN (Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 49/174 (28.16%), Postives = 77/174 (44.25%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGAT--QMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 529
            S+LE  ++ +  V FSP+   LA+ S D TVR WD  TE P +   T  GH   V+S+ + P  + L   C  N +I  W  + G     + AG  K  +G +   +   P    + +++ +  + I D     C   L GH   V  + W   G   ++  D  ++VW    G
Sbjct:  108 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHF---TCKGHRHWVLSISWSPDGKKLASGC-KNGQILLWDPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDG 277          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 51/206 (24.76%), Postives = 96/206 (46.60%), Query Frame = 2
Query:   62 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAVENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            +T+V  + S S   T S DRT ++WDT + +  L T  GH   V ++ F+    D   +   +   + WS+  G C   F+  +     + F P+   +   +++    + +++   +VC L+  GH  ++ S+ +NTSG+ + + S D  V VW   +G K   ++ L     +  S +F+     +L     +T  LW+ T  +
Sbjct:   95 LTNVALNKSGSCFITGSYDRTCKLWDTASGE-ELNTLEGHRNVVYAIAFNNPYGDKTATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWNIQNGEEVCTLR--GHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGGK---VNILIGHCAEISSALFNWDCSLILTGSMDKTCMLWDATNGK 294          

HSP 2 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 50/219 (22.83%), Postives = 99/219 (45.21%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 652
            LW  E+     T    T  I  + F+P  + +AT S D T ++W+ +N +  + T  GHS  ++SL F+ S + ++    +++ +  W  + G    +    C   ++ + F      IL  +++    + D     C   L GH +++   C++ +G+ +A+ S D   R++   S +  +CI +L     +     F+P    LL     +T  +W+
Sbjct:  161 LWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWNIQNGE-EVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVV-VWDADTGGKVNILIGHCAEISSAL-FNWDCSLILTGSMDKTCMLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIF---SAATRKCIAKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWD 373          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 52/167 (31.14%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ----MRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 520
            + L++  +  TDV FSP    LAT+SADRT ++W T+     L+TF GH   +  + FHPS +  L +   +   R W IN G+       Q G ++    + FQ       +  +++   + D+ T    L  QGH   V SV ++ +G +LAS   D   R+W +
Sbjct:  292 AVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGT--LLQTFEGHLDRLARVAFHPSGK-YLGTTSYDKTWRLWDINTGA---ELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL 452          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NUDF_EMENI (Nuclear distribution protein nudF OS=Emericella nidulans GN=nudF PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 51/245 (20.82%), Postives = 107/245 (43.67%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR--ILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS--------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 661
            +W  E   ++ TL+   + ++ + +        LA+ S+D T+++WD      ++RT +GH  +V S+ F  S ++ L S   +  +R W ++ G C  V K  + +      P      +++   +  I++ +V +   +  L GH+N +    +    S E+LA+++                    D+ +++W     ++G  I  L    N     VFHP    L  +   +T+  W++++
Sbjct:  140 IWDWELGEIERTLKGHIRGVSGLDYGGQKGNTLLASCSSDLTIKLWDPSKDYANIRTLSGHDHSVSSVRFLTSNDNHLISASRDGTLRIWDVSTGFCVKVIKSATESWIRDVSPSFDGKWLVSGGRDQAITVWEVSSAEPKAALLGHENFIECCVFAPPASYEHLATLAGLKKPPPATSSCEFVATGARDKTIKLWE----ARGRLIKTLHGHDNWVRGLVFHPGGKYLFSVSDDKTIRCWDLSQ 380          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 47/219 (21.46%), Postives = 97/219 (44.29%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGS-GSKGECIHELSCTGNKFHS----CVFHPTFPSLLVIGCYETLELWNMTENR 667
            +TL+  +  + ++ ++   S L ++S D+TV VWD+E  +  ++   GH++ V S   +P++    L+C+  ++  ++ W I   +    F+       + F     +I++  ++N I + D+        ++GH + V  +  ++ G YL S   D  VRVW +     K  C+       + F      C + P    +        + +W+ T  R
Sbjct:  104 ATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGE-RVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRR 319          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 47/219 (21.46%), Postives = 97/219 (44.29%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGS-GSKGECIHELSCTGNKFHS----CVFHPTFPSLLVIGCYETLELWNMTENR 667
            +TL+  +  + ++ ++   S L ++S D+TV VWD+E  +  ++   GH++ V S   +P++    L+C+  ++  ++ W I   +    F+       + F     +I++  ++N I + D+        ++GH + V  +  ++ G YL S   D  VRVW +     K  C+       + F      C + P    +        + +W+ T  R
Sbjct:  104 ATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGE-RVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRR 319          
The following BLAST results are available for this feature:
BLAST of FC932499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NUDF_ASPFU2.260e-1129.94Nuclear distribution protein nudF homolog OS=Asper... [more]
KTNB1_CHICK2.260e-1126.49Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
COPA_YEAST2.260e-1126.13Coatomer subunit alpha OS=Saccharomyces cerevisiae... [more]
NLE1_PONAB2.951e-1128.16Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]
NLE1_HUMAN2.951e-1128.16Notchless protein homolog 1 OS=Homo sapiens GN=NLE... [more]
WDR69_MACFA3.855e-1124.76WD repeat-containing protein 69 OS=Macaca fascicul... [more]
PRP4_ARATH3.855e-1131.14U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
NUDF_EMENI3.855e-1120.82Nuclear distribution protein nudF OS=Emericella ni... [more]
SNR40_MOUSE5.034e-1121.46U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
SNR40_BOVIN5.034e-1121.46U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]

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Properties
Property NameValue
Genbank descriptionC34209C06EF PostHarveN Citrus clementina cDNA clone C34209C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932499 ID=FC932499; Name=FC932499; organism=Citrus clementina; type=EST; length=707bp
TGTGTTATGGTGCACGGAGTCTTTTACGGTAAAGTCTACACTTGAGGAAC
GTACTCAATGGATAACTGATGTCCGTTTCAGTCCAAGCCTATCAAGGCTG
GCTACATCTTCAGCTGATAGAACTGTCAGGGTTTGGGATACTGAAAATCC
TGACTATTCACTTCGTACTTTTACGGGTCATTCTACAACTGTTATGTCTT
TGGATTTCCATCCTAGTAAAGAAGACCTTCTCTGTTCTTGTGATAATAAT
AGTGAGATACGATACTGGAGTATCAACAATGGTAGCTGTGCTGGAGTTTT
CAAGTGTCAGAGTGGTGCAACCCAGATGAGATTTCAACCTCGTCTTGGAA
GGATTCTTGCTGCAGCCGTAGAGAACTATATCTCTATACTTGATGTAGAG
ACCCAAGTTTGCAGACTTAAATTACAGGGTCATAAAAATCAAGTTCATTC
TGTGTGCTGGAACACTTCGGGTGAGTATCTGGCATCAGTGAGTGACGAAT
TAGTCAGGGTGTGGAGCATTGGTTCTGGCAGCAAAGGGGAATGCATTCAT
GAGTTAAGCTGTACTGGCAACAAATTCCATAGCTGTGTTTTCCATCCCAC
ATTCCCCTCACTATTGGTTATCGGCTGTTATGAGACTTTGGAGCTCTGGA
ACATGACTGAAAACAGACACTGACTCTGAGTGCACACGACAAGCTTGTAT
CATCTTT
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