FC932499
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11 Identity = 51/181 (28.18%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 2 VLWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAV-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 520 VL+ S + STL ++ +T V+F + T+SAD+TVR+W NP +Y+ T HS V ++ HP+ + + S + ++ +++GSC S T F P G IL ++ + I DV++Q K GH +V ++ ++ +G +LA+ +++ VR+W + Sbjct: 247 VLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW--RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFV-SASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPD-GLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDL 423
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: WDR88_HUMAN (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11 Identity = 55/227 (24.23%), Postives = 100/227 (44.05%), Query Frame = 2 Query: 5 LWCTESFTVKSTLEERTQW-ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 661 LW +V E R + + + + SR+ +S D+TVR WD E L + T ++S F P + ++ D + I N + V K T F P R+ + +++ I I DV +Q L + + H N + + C+ SG +L + S D+ +++W++ +G ++G C+ + SC F L+ G T+ +W++ E Sbjct: 128 LWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETG--KLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNRGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAE 352
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11 Identity = 47/219 (21.46%), Postives = 97/219 (44.29%), Query Frame = 2 Query: 35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGS-GSKGECIHELSCTGNKFHS----CVFHPTFPSLLVIGCYETLELWNMTENR 667 +TL+ + + ++ ++ S L ++S D+TV VWD+E + ++ GH++ V S +P++ L+C+ ++ ++ W I + F+ + F +I++ ++N I + D+ ++GH + V + ++ G YL S D VRVW + K C+ + F C + P + + +W+ T R Sbjct: 103 ATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGE-RVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRR 318
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11 Identity = 47/174 (27.01%), Postives = 76/174 (43.68%), Query Frame = 2 Query: 35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGAT--QMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 529 S+LE ++ + V FSP+ LA+ S D TVR WD TE P + T GH V+S+ + P + L C N +I W + G + G K +G + + P + +++ + + + D C L GH V + W G ++ D ++VW G Sbjct: 108 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHF---TCKGHRHWVLSISWSPDGKKLASGC-KNGQILLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDG 277
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11 Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 2 Query: 5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS------IGSG 529 LW +L + I V F S +A +A T+++WD E +RT TGH + +S+DFHP E S ++ ++ W I C +K + G +RF P +++ +N + + D+ + + H+ Q+ S+ ++ LA+ S D V+ W IGSG Sbjct: 43 LWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSG 223
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11 Identity = 55/203 (27.09%), Postives = 88/203 (43.35%), Query Frame = 2 Query: 11 CTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM---------RFQPRLGRILAAA-VENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 586 CT+ F S W T+ F A+ S D+ + V + ++TF GH+ V ++ + P + LL SC ++ ++ WS+N C + S P ILA+A ++ + + DVE C L H V+SV ++ G++LAS S D+ V +WS G+ +H TG F C Sbjct: 485 CTQQFAFHSAPALDVDWQTNQAF-------ASCSTDQRIHVCRL-GVNEPIKTFKGHTNEVNAIKWCPQGQ-LLASCSDDMTLKIWSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWST---QTGQLVHSYKGTGGIFEVC 675
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11 Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 2 Query: 5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 520 LW ++ T + T + DV F P AT+S D+T ++W ++ Y LR F GH + V + FHP+ +L ++ R W ++ G VF + T + P + +A E I + D+ T ++GH+ ++S+ ++ L S SD VR W + Sbjct: 405 LWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDH-IYPLRVFAGHLSDVDCVTFHPNSAYVLTG-SSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDV 576
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11 Identity = 47/219 (21.46%), Postives = 98/219 (44.75%), Query Frame = 2 Query: 35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGS-GSKGECIHELSCTGNKFHS----CVFHPTFPSLLVIGCYETLELWNMTENR 667 +TL+ + + ++ ++ S L ++S D+TV VWD+E + ++ GH++ V S +P++ L+C+ ++ ++ W I + F+ + F +I++ ++N I + D+ ++GH + V + ++ G YL S D VRVW + K C+ + F C + P + ++ +W+ T R Sbjct: 103 ATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGE-RVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRR 318
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11 Identity = 62/225 (27.56%), Postives = 101/225 (44.89%), Query Frame = 2 Query: 8 WCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAVENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667 W +ES+ +K + ++ +++S R+ T + D ++VWD N + + TFT H++ V L F + ++L S + +R W + F S + + P G I+ A ++ I Q +L L GH+ V S+ +N+SG LAS S D+ VR+W I S S I E + S FHP + V L WN+ E + Sbjct: 326 WQSESYVLKQ--QSHYDALSTLQYSSDGQRIITGADDGKIKVWDM-NSGFCIVTFTQHTSAVSGLCFS-KRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPS-GEIVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSG---IVEPLPIPSDVLSLAFHPDGKEVCVASLDGQLTFWNVQEGK 542
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NUDF_YARLI (Nuclear distribution protein PAC1 OS=Yarrowia lipolytica GN=PAC1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11 Identity = 56/255 (21.96%), Postives = 109/255 (42.75%), Query Frame = 2 Query: 5 LWCTESFTVKSTLEERTQWITDVRFSP---SLSR-------------------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCW-------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 661 +W E +++T++ T+ + DV FS SR L + S+D T+R+WD +N +++T TGH T+ ++ F S ++ S + +R WS+ +G C + + I +A +++ + + + ++ L GH++ + V TS ++ S S D+ +RVWS S+G+ + L N V HP L+ + +T+ W++ + Sbjct: 142 IWDYELGEIETTIKAHTRGVLDVDFSQPDTGASRDKSHDKPRADVSHAQPRALLVSCSSDLTIRIWDPQNEYANVKTLTGHDHTISAVKFTASGNHVI-SASRDKTVRVWSVQSGYCVRTVHGHTDWVKSCAALNEEFIFSAGIDHVTRVSEFVSGDGKMTLLGHEHVIEGVAVYPKSAAGCLAKLDKTSSYFVVSWSRDKTIRVWS----SRGDPLLILRGHDNWVRGVVLHPAGRYLVSVSDDKTMRCWDLEQ 391 The following BLAST results are available for this feature:
BLAST of FC932499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 102
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932499 ID=FC932499; Name=FC932499; organism=Citrus clementina; type=EST; length=707bpback to top |