FC932499

Overview
NameFC932499
Unique NameFC932499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 51/181 (28.18%), Postives = 92/181 (50.83%), Query Frame = 2
Query:    2 VLWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAV-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 520
            VL+   S  + STL   ++ +T V+F      + T+SAD+TVR+W   NP   +Y+   T   HS  V ++  HP+ +  + S   +    ++ +++GSC       S     T   F P  G IL     ++ + I DV++Q    K  GH  +V ++ ++ +G +LA+ +++ VR+W +
Sbjct:  247 VLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIW--RNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFV-SASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPD-GLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDL 423          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: WDR88_HUMAN (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 55/227 (24.23%), Postives = 100/227 (44.05%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQW-ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 661
            LW     +V    E R +  + +   +   SR+  +S D+TVR WD E     L     + T ++S  F P  + ++   D +  I      N +   V K       T   F P   R+ + +++  I I DV +Q   L + + H N + + C+  SG +L + S D+ +++W++ +G   ++G C+  +        SC F      L+  G   T+ +W++ E
Sbjct:  128 LWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETG--KLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNRGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAE 352          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 47/219 (21.46%), Postives = 97/219 (44.29%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGS-GSKGECIHELSCTGNKFHS----CVFHPTFPSLLVIGCYETLELWNMTENR 667
            +TL+  +  + ++ ++   S L ++S D+TV VWD+E  +  ++   GH++ V S   +P++    L+C+  ++  ++ W I   +    F+       + F     +I++  ++N I + D+        ++GH + V  +  ++ G YL S   D  VRVW +     K  C+       + F      C + P    +        + +W+ T  R
Sbjct:  103 ATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGE-RVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRR 318          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 47/174 (27.01%), Postives = 76/174 (43.68%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGAT--QMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 529
            S+LE  ++ +  V FSP+   LA+ S D TVR WD  TE P +   T  GH   V+S+ + P  + L   C  N +I  W  + G     +  G  K  +G +   +   P    + +++ +  + + D     C   L GH   V  + W   G   ++  D  ++VW    G
Sbjct:  108 SSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHF---TCKGHRHWVLSISWSPDGKKLASGC-KNGQILLWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDG 277          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS------IGSG 529
            LW         +L   +  I  V F  S   +A  +A  T+++WD E     +RT TGH +  +S+DFHP  E    S   ++ ++ W I    C   +K  + G   +RF P    +++   +N + + D+       + + H+ Q+ S+ ++     LA+ S D  V+ W       IGSG
Sbjct:   43 LWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSG 223          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 55/203 (27.09%), Postives = 88/203 (43.35%), Query Frame = 2
Query:   11 CTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM---------RFQPRLGRILAAA-VENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 586
            CT+ F   S       W T+  F       A+ S D+ + V      +  ++TF GH+  V ++ + P  + LL SC ++  ++ WS+N   C    +  S                 P    ILA+A  ++ + + DVE   C   L  H   V+SV ++  G++LAS S D+ V +WS      G+ +H    TG  F  C
Sbjct:  485 CTQQFAFHSAPALDVDWQTNQAF-------ASCSTDQRIHVCRL-GVNEPIKTFKGHTNEVNAIKWCPQGQ-LLASCSDDMTLKIWSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWST---QTGQLVHSYKGTGGIFEVC 675          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 520
            LW  ++ T     +  T  + DV F P     AT+S D+T ++W  ++  Y LR F GH + V  + FHP+   +L    ++   R W ++ G    VF   +   T +   P    + +A  E  I + D+ T      ++GH+  ++S+ ++     L S  SD  VR W +
Sbjct:  405 LWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDH-IYPLRVFAGHLSDVDCVTFHPNSAYVLTG-SSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAWDV 576          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 47/219 (21.46%), Postives = 98/219 (44.75%), Query Frame = 2
Query:   35 STLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGS-GSKGECIHELSCTGNKFHS----CVFHPTFPSLLVIGCYETLELWNMTENR 667
            +TL+  +  + ++ ++   S L ++S D+TV VWD+E  +  ++   GH++ V S   +P++    L+C+  ++  ++ W I   +    F+       + F     +I++  ++N I + D+        ++GH + V  +  ++ G YL S   D  VRVW +     K  C+       + F      C + P    +       ++ +W+ T  R
Sbjct:  103 ATLKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGE-RVKRLKGHTSFVNSC--YPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRSVCVWDTTSRR 318          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 62/225 (27.56%), Postives = 101/225 (44.89%), Query Frame = 2
Query:    8 WCTESFTVKSTLEERTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAVENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENR 667
            W +ES+ +K   +     ++ +++S    R+ T + D  ++VWD  N  + + TFT H++ V  L F   + ++L S   +  +R W +        F   S    + +   P  G I+ A  ++   I     Q  +L   L GH+  V S+ +N+SG  LAS S D+ VR+W I S S    I E     +   S  FHP    + V      L  WN+ E +
Sbjct:  326 WQSESYVLKQ--QSHYDALSTLQYSSDGQRIITGADDGKIKVWDM-NSGFCIVTFTQHTSAVSGLCFS-KRGNVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPS-GEIVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSG---IVEPLPIPSDVLSLAFHPDGKEVCVASLDGQLTFWNVQEGK 542          
BLAST of FC932499 vs. ExPASy Swiss-Prot
Match: NUDF_YARLI (Nuclear distribution protein PAC1 OS=Yarrowia lipolytica GN=PAC1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 56/255 (21.96%), Postives = 109/255 (42.75%), Query Frame = 2
Query:    5 LWCTESFTVKSTLEERTQWITDVRFSP---SLSR-------------------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAVENYISILDVETQVCRLKLQGHKNQVHSVCW-------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 661
            +W  E   +++T++  T+ + DV FS      SR                   L + S+D T+R+WD +N   +++T TGH  T+ ++ F  S   ++ S   +  +R WS+ +G C       +   +         I +A +++   + +  +   ++ L GH++ +  V                TS  ++ S S D+ +RVWS    S+G+ +  L    N     V HP    L+ +   +T+  W++ +
Sbjct:  142 IWDYELGEIETTIKAHTRGVLDVDFSQPDTGASRDKSHDKPRADVSHAQPRALLVSCSSDLTIRIWDPQNEYANVKTLTGHDHTISAVKFTASGNHVI-SASRDKTVRVWSVQSGYCVRTVHGHTDWVKSCAALNEEFIFSAGIDHVTRVSEFVSGDGKMTLLGHEHVIEGVAVYPKSAAGCLAKLDKTSSYFVVSWSRDKTIRVWS----SRGDPLLILRGHDNWVRGVVLHPAGRYLVSVSDDKTMRCWDLEQ 391          
The following BLAST results are available for this feature:
BLAST of FC932499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
PR19B_ARATH5.034e-1128.18Pre-mRNA-processing factor 19 homolog 2 OS=Arabido... [more]
WDR88_HUMAN6.575e-1124.23WD repeat-containing protein 88 OS=Homo sapiens GN... [more]
SNR40_HUMAN6.575e-1121.46U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
NLE1_MOUSE6.575e-1127.01Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
KTNB1_ARATH6.575e-1126.23Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
EBI_DROME6.575e-1127.09F-box-like/WD repeat-containing protein ebi OS=Dro... [more]
TAF5_SCHPO8.587e-1127.01Transcription initiation factor TFIID subunit 5 OS... [more]
SNR40_PONAB8.587e-1121.46U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
PWP2_SCHPO8.587e-1127.56Periodic tryptophan protein 2 homolog OS=Schizosac... [more]
NUDF_YARLI8.587e-1121.96Nuclear distribution protein PAC1 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionC34209C06EF PostHarveN Citrus clementina cDNA clone C34209C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932499 ID=FC932499; Name=FC932499; organism=Citrus clementina; type=EST; length=707bp
TGTGTTATGGTGCACGGAGTCTTTTACGGTAAAGTCTACACTTGAGGAAC
GTACTCAATGGATAACTGATGTCCGTTTCAGTCCAAGCCTATCAAGGCTG
GCTACATCTTCAGCTGATAGAACTGTCAGGGTTTGGGATACTGAAAATCC
TGACTATTCACTTCGTACTTTTACGGGTCATTCTACAACTGTTATGTCTT
TGGATTTCCATCCTAGTAAAGAAGACCTTCTCTGTTCTTGTGATAATAAT
AGTGAGATACGATACTGGAGTATCAACAATGGTAGCTGTGCTGGAGTTTT
CAAGTGTCAGAGTGGTGCAACCCAGATGAGATTTCAACCTCGTCTTGGAA
GGATTCTTGCTGCAGCCGTAGAGAACTATATCTCTATACTTGATGTAGAG
ACCCAAGTTTGCAGACTTAAATTACAGGGTCATAAAAATCAAGTTCATTC
TGTGTGCTGGAACACTTCGGGTGAGTATCTGGCATCAGTGAGTGACGAAT
TAGTCAGGGTGTGGAGCATTGGTTCTGGCAGCAAAGGGGAATGCATTCAT
GAGTTAAGCTGTACTGGCAACAAATTCCATAGCTGTGTTTTCCATCCCAC
ATTCCCCTCACTATTGGTTATCGGCTGTTATGAGACTTTGGAGCTCTGGA
ACATGACTGAAAACAGACACTGACTCTGAGTGCACACGACAAGCTTGTAT
CATCTTT
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