FC932500

Overview
NameFC932500
Unique NameFC932500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_OCHA4 (50S ribosomal protein L2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  289 NNTAY----RYQSSETELVGDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            N TA+    RY+  E   +        P++  V DK++   A   ++ + G+ MPLA M +GTI+HN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+R
Sbjct:   86 NRTAFIALIRYEDGELAYI------LAPQRLAVGDKVV---AGNSVDVKPGNAMPLASMPVGTIVHNVELKPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVPGACFASVGAVSNPDHGNINDGKAGRSVWRGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_LACF3 (50S ribosomal protein L2 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            D + ++G+ +PL  + +GT+IHNIE+ PG+GG+L R+AGTSA++L +    + LVRL SG  ++I   CRATIG++ N  HG     KAG+SR+ G+R
Sbjct:  121 DADIKVGNTLPLKNIPVGTVIHNIELKPGKGGQLTRSAGTSAQLLGK-EEKYVLVRLSSGEVRMILAACRATIGSIGNDEHGLLVKGKAGRSRYAGQR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACSK (50S ribosomal protein L2 OS=Bacillus clausii (strain KSM-K16) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            D + + G+ +PLA + +GT+IHNIE+ PG+GG+LVR+AGT A++L +    + LVRL SG  + I + CRATIG V N  H    + KAG+SRW G R
Sbjct:  121 DADIKTGNALPLANIPVGTVIHNIELRPGKGGQLVRSAGTEAQLLGK-EGDYALVRLNSGETRYILSTCRATIGQVGNVEHELINIGKAGRSRWKGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_STRU0 (50S ribosomal protein L2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +IG+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRATIG+V N       + KAG++RW G R
Sbjct:  125 KIGNALPLANIPVGTVIHNIEMKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGSVGNEQQSLVNIGKAGRNRWKGVR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RHOP2 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 50/115 (43.48%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + ++RL SG ++L+  RC ATIG VSNP H    + KAG++RWLG R
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIMRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRTRWLGWR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V D ++   A  +++ + G+ MPL  M +GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+R
Sbjct:  107 PQRLGVGDSVV---AGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-HGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M+  + + ++G+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  ++I + CRA+IG V N  H    + KAG+SRW G R
Sbjct:  117 MSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVLGK-EGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACHD (50S ribosomal protein L2 OS=Bacillus halodurans GN=rplB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            ++G+ +PL  + +GT+IHNIE+ PG+GG+LVR+AG  A++L +    + LVRL SG  + I   CRATIG V N  H    + KAG+SRWLG+R
Sbjct:  125 KVGNALPLKNIPVGTVIHNIELKPGKGGQLVRSAGAEAQLLGK-EGDYVLVRLNSGETRYILATCRATIGQVGNLEHELVNIGKAGRSRWLGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19
Identity = 47/115 (40.87%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P+K ++ D+++   A  DI  +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS +++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG R
Sbjct:  107 PQKLSIGDRVISSQA-ADI--KIGNCLPLKSIPIGTTLHNVEMKVGKGGQIARSAGTSVELVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RHISN (50S ribosomal protein L2 OS=Rhizobium sp. (strain NGR234) GN=rplB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19
Identity = 47/115 (40.87%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++    DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+R
Sbjct:  107 PQRLAAGDKVIASDKAVDVKP--GNTMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKR 218          
The following BLAST results are available for this feature:
BLAST of FC932500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_OCHA45.043e-1937.3250S ribosomal protein L2 OS=Ochrobactrum anthropi ... [more]
RL2_LACF35.043e-1946.9450S ribosomal protein L2 OS=Lactobacillus fermentu... [more]
RL2_BACSK5.043e-1948.9850S ribosomal protein L2 OS=Bacillus clausii (stra... [more]
RL2_STRU06.586e-1950.0050S ribosomal protein L2 OS=Streptococcus uberis (... [more]
RL2_RHOP26.586e-1943.4850S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_BART16.586e-1940.8750S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_BACSU6.586e-1945.1050S ribosomal protein L2 OS=Bacillus subtilis GN=r... [more]
RL2_BACHD6.586e-1948.9450S ribosomal protein L2 OS=Bacillus halodurans GN... [more]
RL2_RICTY8.601e-1940.8750S ribosomal protein L2 OS=Rickettsia typhi GN=rp... [more]
RL2_RHISN8.601e-1940.8750S ribosomal protein L2 OS=Rhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34209C07EF PostHarveN Citrus clementina cDNA clone C34209C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932500 ID=FC932500; Name=FC932500; organism=Citrus clementina; type=EST; length=712bp
GATCTCTCTACTCCCTACTCACTCAGAAAAACTCTCACGGTGGCTGTCAC
CTTTCTGCTCAGTGTATTCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTAGGGTGCTTTAGCTTCTGTCACCGCCGGTAACATGTTGTGAT
AGACAGTGAAATCAGCAGAAGAAAACAAAACGGAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTTCGTTCTCAACAACAACACTGCT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAACTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCA
TGGAGCTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAA
GACTGTGGNTAG
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