FC932500

Overview
NameFC932500
Unique NameFC932500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_LACDB (50S ribosomal protein L2 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            VD + ++G+ +PL  +  GT +HNIE+ PG+GG++ R+AGTSA++L      +  VRL SG  + I + CRATIG V N  H    + KAG+SRW+G+R
Sbjct:  120 VDADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVL-GVDGKYTQVRLQSGEVREILSECRATIGAVGNEQHSLINIGKAGRSRWMGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_LACDA (50S ribosomal protein L2 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            VD + ++G+ +PL  +  GT +HNIE+ PG+GG++ R+AGTSA++L      +  VRL SG  + I + CRATIG V N  H    + KAG+SRW+G+R
Sbjct:  120 VDADIKVGNALPLKNIPTGTEVHNIELKPGKGGQIARSAGTSAQVL-GVDGKYTQVRLQSGEVREILSECRATIGAVGNEQHSLINIGKAGRSRWMGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            D   + G+ + L  + +GTIIHNIE+ PG+GG+L RAAGT A+IL +    +  ++LPSG  +LI   C+ATIG V N  H    + KAG+ RWLG+R
Sbjct:  121 DAEIKPGNALKLKNIPVGTIIHNIELKPGKGGQLARAAGTMAQILAK-EGKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAGRKRWLGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLG 696
            P++  V DK++   A   ++ + G+  PL+ + +GTI+HN+E+  G+GG++ R+AG+ A+I+      + +VRL SG ++LI   C AT+G VSNP H    L KAG+SRWLG
Sbjct:  107 PQRLAVGDKVI---AGEQVDVKPGNAAPLSNLPVGTIVHNVEMKIGKGGQIARSAGSYAQIVGRD-QGYVIVRLNSGEQRLIHGACYATVGAVSNPDHMNTSLGKAGRSRWLG 215          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RK2_ZYGCR (50S ribosomal protein L2, chloroplastic OS=Zygnema circumcarinatum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P+  ++ D+I+    H  I+   G+ +PL  M +GT IHNIE+ PG+GG++ RAAG  AKI+ +    F  +RLPSG  +L+  +C ATIG V N     + + KAG  RWLGRR
Sbjct:  107 PRGISIGDQILSD-THAPISP--GNALPLTNMPLGTTIHNIELQPGKGGQVARAAGAIAKIIAK-EGKFATLRLPSGEVRLVLQQCLATIGQVGNVDANNQSIGKAGSKRWLGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 45/115 (39.13%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P+K +V D+++      D + +IG+C+PL  +  GT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG R
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKFIPTGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BRUME (50S ribosomal protein L2 OS=Brucella melitensis GN=rplB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 46/115 (40.00%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+R
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELMPGKGGQIARSAGTYAQLVGR-DQGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_SYNFM (50S ribosomal protein L2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  427 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            G+C+ LA M +GTIIHN+E+ PG+GG+L R+AG+S +++ KE T +  ++RLPS   +++   C+AT+G V N  H    L KAG+ RWLG+R
Sbjct:  127 GNCLRLANMPLGTIIHNVELKPGKGGQLARSAGSSIQLIAKEGTHA--ILRLPSSEMRMVPISCKATVGQVGNIDHENLSLGKAGRKRWLGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_STAHJ (50S ribosomal protein L2 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 44/98 (44.90%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            D + ++G+ +PL  + +GT+IHNIE+ PG+GG+L R+AG S+++L +    + L+RL SG  ++I + CRATIG V N  H    + KAG+SRW G R
Sbjct:  121 DADIKVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVLGK-EGKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_STAAW (50S ribosomal protein L2 OS=Staphylococcus aureus (strain MW2) GN=rplB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  382 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +I+   A  DI  ++G+ +PL  + +GT++HNIE+ PG+GG++ R+AG SA++L +    + L+RL SG  ++I + CRATIG V N  H    + KAG+SRW G R
Sbjct:  114 QIVESGAEADI--KVGNALPLQNIPVGTVVHNIELKPGKGGQIARSAGASAQVLGK-EGKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGIR 217          
The following BLAST results are available for this feature:
BLAST of FC932500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LACDB3.269e-1845.4550S ribosomal protein L2 OS=Lactobacillus delbruec... [more]
RL2_LACDA3.269e-1845.4550S ribosomal protein L2 OS=Lactobacillus delbruec... [more]
RL2_HALOH3.269e-1846.9450S ribosomal protein L2 OS=Halothermothrix orenii... [more]
RL2_AZOC53.269e-1841.5950S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]
RK2_ZYGCR3.269e-1843.4850S ribosomal protein L2, chloroplastic OS=Zygnema... [more]
RL2_RICFE4.269e-1839.1350S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_BRUME4.269e-1840.0050S ribosomal protein L2 OS=Brucella melitensis GN... [more]
RL2_SYNFM5.575e-1847.3150S ribosomal protein L2 OS=Syntrophobacter fumaro... [more]
RL2_STAHJ5.575e-1844.9050S ribosomal protein L2 OS=Staphylococcus haemoly... [more]
RL2_STAAW5.575e-1842.9950S ribosomal protein L2 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionC34209C07EF PostHarveN Citrus clementina cDNA clone C34209C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932500 ID=FC932500; Name=FC932500; organism=Citrus clementina; type=EST; length=712bp
GATCTCTCTACTCCCTACTCACTCAGAAAAACTCTCACGGTGGCTGTCAC
CTTTCTGCTCAGTGTATTCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTAGGGTGCTTTAGCTTCTGTCACCGCCGGTAACATGTTGTGAT
AGACAGTGAAATCAGCAGAAGAAAACAAAACGGAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTTCGTTCTCAACAACAACACTGCT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAACTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCA
TGGAGCTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAA
GACTGTGGNTAG
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