FC932500

Overview
NameFC932500
Unique NameFC932500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_STRP2 (50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG SA++L      + LVRL SG  ++I   CRAT+G V N  HG   L KAG+SRW G R
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_HYDS0 (50S ribosomal protein L2 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  427 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            G+ MPL  + +GT IHNIE+NPG+G KLVRAAG SA+++ +    +  VRLPSG  +LI+ +C ATIG V    H   KL KAG+SRWLG R
Sbjct:  137 GNAMPLRFIPVGTFIHNIELNPGRGAKLVRAAGLSAQVIGK-IEGYAQVRLPSGEVRLINDKCMATIGVVGLAEHELVKLGKAGRSRWLGMR 227          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  289 NNTAY----RYQSSETELVGDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            N TA+    +YQ  E   +        P++  V D I+    +VD+    G+ MPL  M +GTI+HNIEV  G+GG+L R+AGT A+++      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+ RW+GRR
Sbjct:   86 NRTAFIALVKYQDGELAYI------LAPQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V D ++    +VD+    G+ MPL  M +GTIIHNIEV  G+GG+L R+AGT A+++      + ++RL SG ++L+  RCR TIG VSNP H    + KAG++RWLGR+
Sbjct:  107 PQRLAVGDSVVAGN-YVDVKP--GNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGRD-QDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRK 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+SRWLGR+
Sbjct:  107 PQRLAVGDTVLAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRK 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_PORGI (50S ribosomal protein L2 OS=Porphyromonas gingivalis GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 45/94 (47.87%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            ++G+ +PLA + +GTIIHNIE+ PGQG K+VR+AG+ A++      ++ ++++PSG  + I + C+ATIG+V N  H  +K  KAG+SRWLGRR
Sbjct:  125 EVGNALPLANIPVGTIIHNIELRPGQGAKMVRSAGSFAQLTSRE-GTYVVIKMPSGEVRRILSTCKATIGSVGNSDHALEKSGKAGRSRWLGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_PORG3 (50S ribosomal protein L2 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 45/94 (47.87%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            ++G+ +PLA + +GTIIHNIE+ PGQG K+VR+AG+ A++      ++ ++++PSG  + I + C+ATIG+V N  H  +K  KAG+SRWLGRR
Sbjct:  125 EVGNALPLANIPVGTIIHNIELRPGQGAKMVRSAGSFAQLTSRE-GTYVVIKMPSGEVRRILSTCKATIGSVGNSDHALEKSGKAGRSRWLGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_PARD8 (50S ribosomal protein L2 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            D   ++G+ +P+A + +GTIIHNIE+ PGQG K+VR+AG  A++  +   ++ ++++PSG  + I   C+ATIG V N  H  +K  KAG+SRWLGRR
Sbjct:  121 DAAPEVGNTLPMANIPVGTIIHNIELRPGQGAKMVRSAGAFAQLTSKE-GAYAIIKMPSGETRKILAACKATIGAVGNSDHALEKSGKAGRSRWLGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_MAGSM (50S ribosomal protein L2 OS=Magnetococcus sp. (strain MC-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 46/123 (37.40%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  334 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            G+ S    P++  V D ++      +++ + G+CMPL  M IGTIIHN+E+ PG+GG++ R+AG   +++ +    +  +++PSG  +L+   C AT+G VSNP +   K+ KAG++RW+G+R
Sbjct:   99 GEKSYILAPQRLQVGDTVVSAKTLDNVDVKPGNCMPLRVMPIGTIIHNVELKPGKGGQVARSAGNYIQLMGK-EGKYAQLKMPSGEMRLVLLECMATVGMVSNPDNSNTKIGKAGRTRWMGKR 220          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_LACSS (50S ribosomal protein L2 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = 1
Query:  406 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            V+ + ++G+ +PLA +  GT+IHNIE+ PG+GG+LVR+AGTSA++L +    + +VRL SG  ++I   CRAT+GTV N  H   K+ KAG+ RW+G R
Sbjct:  120 VNADIKVGNALPLANIPDGTLIHNIELKPGKGGQLVRSAGTSAQLLGK-EGKYAIVRLTSGETRMILLTCRATVGTVGNGQHELIKIGKAGRKRWMGIR 217          
The following BLAST results are available for this feature:
BLAST of FC932500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRP22.047e-2052.1350S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_HYDS02.047e-2054.3550S ribosomal protein L2 OS=Hydrogenobaculum sp. (... [more]
RL2_BRASO2.047e-2041.5550S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_BRAJA2.047e-2045.2250S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_RHOPB2.674e-2045.2250S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PORGI2.674e-2047.8750S ribosomal protein L2 OS=Porphyromonas gingival... [more]
RL2_PORG32.674e-2047.8750S ribosomal protein L2 OS=Porphyromonas gingival... [more]
RL2_PARD82.674e-2045.9250S ribosomal protein L2 OS=Parabacteroides distas... [more]
RL2_MAGSM3.492e-2037.4050S ribosomal protein L2 OS=Magnetococcus sp. (str... [more]
RL2_LACSS3.492e-2048.4850S ribosomal protein L2 OS=Lactobacillus sakei su... [more]

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Properties
Property NameValue
Genbank descriptionC34209C07EF PostHarveN Citrus clementina cDNA clone C34209C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932500 ID=FC932500; Name=FC932500; organism=Citrus clementina; type=EST; length=712bp
GATCTCTCTACTCCCTACTCACTCAGAAAAACTCTCACGGTGGCTGTCAC
CTTTCTGCTCAGTGTATTCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTAGGGTGCTTTAGCTTCTGTCACCGCCGGTAACATGTTGTGAT
AGACAGTGAAATCAGCAGAAGAAAACAAAACGGAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTTCGTTCTCAACAACAACACTGCT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAACTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCA
TGGAGCTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAA
GACTGTGGNTAG
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