FC932500

Overview
NameFC932500
Unique NameFC932500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 47/115 (40.87%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG R
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 47/115 (40.87%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG R
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 47/115 (40.87%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG R
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGK-DSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++ +V D ++   ++VD+    G+ MPL  M +GTI+HNIE+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+ RWLGRR
Sbjct:  107 PQRLSVGDSVIAG-SYVDVKP--GNVMPLGNMPVGTIVHNIELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +A  D   ++G+ +PL  + +GT IHNIE+ PG+GG+LVRAAG SA+IL      +  VRLPSG  +LI  +C AT+GTV    H   KL KAG++RWLG R
Sbjct:  117 VAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGR-QGDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRARWLGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_ENTFA (50S ribosomal protein L2 OS=Enterococcus faecalis GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 46/105 (43.81%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            MR ++  + + ++G+ +PL  + +GT+IHNIE+ PG+GG+L+R+AGTSA++L +    + L+RL SG  ++I   CRATIG+V N  H    + KAG+SRW+ +R
Sbjct:  114 MRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGK-EGKYVLIRLNSGEVRMILATCRATIGSVGNEQHELINIGKAGRSRWMRKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACV8 (50S ribosomal protein L2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +IG+ +PL  + +GT+IHNIE+ PGQG  LVR+AG  A++       +C+++LPSG  + I + C+ATIG+V N  HG +   KAG++RW+GRR
Sbjct:  125 EIGNALPLENIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSRE-GKYCVIKLPSGEVRQILSACKATIGSVGNSDHGLESSGKAGRTRWMGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACTN (50S ribosomal protein L2 OS=Bacteroides thetaiotaomicron GN=rplB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +IG+ +PL  + +GT+IHNIE+ PGQG  LVR+AG  A++       +C+++LPSG  + I + C+ATIG+V N  HG ++  KAG+SRW GRR
Sbjct:  125 EIGNTLPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSRE-GKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLERSGKAGRSRWQGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_MACCJ (50S ribosomal protein L2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            ++G+C+PL  + +GT+IHNIE+ PG+GG+LVR+AG SA++L +    + LVRL SG  ++I + CRATIG V N  H    + KAG+SRW G R
Sbjct:  125 KVGNCLPLQNIPVGTVIHNIELKPGKGGQLVRSAGASAQVLGK-EGKYVLVRLKSGEVRMILSTCRATIGQVGNEQHELINIGKAGRSRWKGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + ++RL SG  ++I  +CRAT+G V N  H    + KAG++RWLG R
Sbjct:  114 MEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIIRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLGIR 217          
The following BLAST results are available for this feature:
BLAST of FC932500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICPU5.957e-2040.8750S ribosomal protein L2 OS=Rickettsia peacockii (... [more]
RL2_RICCN5.957e-2040.8750S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE5.957e-2040.8750S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_RHOPS5.957e-2044.3550S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PERMH5.957e-2050.0050S ribosomal protein L2 OS=Persephonella marina (... [more]
RL2_ENTFA5.957e-2043.8150S ribosomal protein L2 OS=Enterococcus faecalis ... [more]
RL2_BACV85.957e-2046.8150S ribosomal protein L2 OS=Bacteroides vulgatus (... [more]
RL2_BACTN5.957e-2047.8750S ribosomal protein L2 OS=Bacteroides thetaiotao... [more]
RL2_MACCJ7.780e-2050.0050S ribosomal protein L2 OS=Macrococcus caseolytic... [more]
RL2_GEOTN7.780e-2043.8150S ribosomal protein L2 OS=Geobacillus thermodeni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209C07EF PostHarveN Citrus clementina cDNA clone C34209C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932500 ID=FC932500; Name=FC932500; organism=Citrus clementina; type=EST; length=712bp
GATCTCTCTACTCCCTACTCACTCAGAAAAACTCTCACGGTGGCTGTCAC
CTTTCTGCTCAGTGTATTCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTAGGGTGCTTTAGCTTCTGTCACCGCCGGTAACATGTTGTGAT
AGACAGTGAAATCAGCAGAAGAAAACAAAACGGAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTTCGTTCTCAACAACAACACTGCT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAACTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCA
TGGAGCTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAA
GACTGTGGNTAG
back to top