FC932500

Overview
NameFC932500
Unique NameFC932500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P    V D+I+   +  D + +IG+ +P+  + +GT IHNIE+ PG+GG+LVRAAGTSA++L      F +VRL SG  + I   CRATIG V N  H    + KAG+SRWLG R
Sbjct:  107 PHNLKVGDQIV---SGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGR-DGEFVIVRLSSGETRRIHNVCRATIGQVGNLDHELLNIGKAGRSRWLGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACFR (50S ribosomal protein L2 OS=Bacteroides fragilis GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +IG+ +PL  + +GT+IHNIE+ PGQG  LVR+AG  A++       +C+++LPSG  + I + C+ATIG+V N  HG +   KAG+SRW GRR
Sbjct:  125 EIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSRE-GKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_BACFN (50S ribosomal protein L2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  421 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            +IG+ +PL  + +GT+IHNIE+ PGQG  LVR+AG  A++       +C+++LPSG  + I + C+ATIG+V N  HG +   KAG+SRW GRR
Sbjct:  125 EIGNALPLQNIPVGTVIHNIELRPGQGAALVRSAGNFAQLTSRE-GKYCVIKLPSGEVRQILSTCKATIGSVGNSDHGLESSGKAGRSRWQGRR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_EXISA (50S ribosomal protein L2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  388 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M  M+  + + ++G+ +PL  + +GT IHNIE+ PG+GG+LVRAAG SA+I +     + +VRL SG  +L    CRATIG+V N  H    + KAG+SRWLG+R
Sbjct:  114 MEIMSGPEADIKVGNALPLVNIPVGTTIHNIELKPGKGGQLVRAAGASAQI-QGRDGKYVIVRLQSGESRLFLGTCRATIGSVGNEEHELVNIGKAGRSRWLGKR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_SULSY (50S ribosomal protein L2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            MA  D   ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAG SA+IL      +  +RLPSG  +L+  +C ATIG V    H   +L KAG+SRWLG R
Sbjct:  117 MAGPDAEIKVGNALPLENIPVGTLVHNIELTPGKGGQLVRAAGMSAQILGR-EGDYVQIRLPSGELRLVYKKCMATIGAVGLAEHELLELGKAGRSRWLGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_CARHZ (50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 47/102 (46.08%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            M+  D + ++G+ +PLA + +GT++HNIE+ PG+GG+LVRAAGT+A++L +    + ++RLPSG  + +   CRATIG V N  H    + KAG++RWLG R
Sbjct:  117 MSGPDADIKVGNALPLANIPVGTLVHNIELYPGKGGQLVRAAGTAAQLLGK-EGRYAILRLPSGEMRKVLLECRATIGQVGNLEHENITIGKAGRARWLGIR 217          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_SINMW (50S ribosomal protein L2 OS=Sinorhizobium medicae (strain WSM419) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+R
Sbjct:  107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKR 218          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_RHIME (50S ribosomal protein L2 OS=Rhizobium meliloti GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  358 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            P++  V DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+R
Sbjct:  107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKR 218          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_SYNJA (50S ribosomal protein L2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  397 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            MA  D   ++G+ MPL  + +GT++HN+E+ PG+GG++VRAAG  A+++ +    +  ++LPSG  ++I   C ATIG V N  H    L KAG+SRWLGRR
Sbjct:  123 MAGPDAPFELGNAMPLERIPLGTVVHNVELYPGRGGQIVRAAGAGAQVVAK-EGKYVSLKLPSGEVRMIRGECYATIGQVGNVDHSNLSLGKAGRSRWLGRR 223          
BLAST of FC932500 vs. ExPASy Swiss-Prot
Match: RL2_STRE4 (50S ribosomal protein L2 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  409 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRR 702
            D + ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAG SA++L +    + LVRL SG  ++I   CRAT+GTV N       + KAG+SRW G R
Sbjct:  121 DADIKVGNALPLVNIPVGTVVHNIELKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRSRWKGIR 217          
The following BLAST results are available for this feature:
BLAST of FC932500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BREBN7.780e-2046.9650S ribosomal protein L2 OS=Brevibacillus brevis (... [more]
RL2_BACFR7.780e-2047.8750S ribosomal protein L2 OS=Bacteroides fragilis G... [more]
RL2_BACFN7.780e-2047.8750S ribosomal protein L2 OS=Bacteroides fragilis (... [more]
RL2_EXISA1.016e-1946.6750S ribosomal protein L2 OS=Exiguobacterium sp. (s... [more]
RL2_SULSY1.327e-1948.0450S ribosomal protein L2 OS=Sulfurihydrogenibium s... [more]
RL2_CARHZ1.327e-1946.0850S ribosomal protein L2 OS=Carboxydothermus hydro... [more]
RL2_SINMW1.733e-1941.7450S ribosomal protein L2 OS=Sinorhizobium medicae ... [more]
RL2_RHIME1.733e-1941.7450S ribosomal protein L2 OS=Rhizobium meliloti GN=... [more]
RL2_SYNJA2.264e-1945.1050S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_STRE42.264e-1946.9450S ribosomal protein L2 OS=Streptococcus equi sub... [more]

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Properties
Property NameValue
Genbank descriptionC34209C07EF PostHarveN Citrus clementina cDNA clone C34209C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932500 ID=FC932500; Name=FC932500; organism=Citrus clementina; type=EST; length=712bp
GATCTCTCTACTCCCTACTCACTCAGAAAAACTCTCACGGTGGCTGTCAC
CTTTCTGCTCAGTGTATTCACCCATCTTTCAATTCCACAGCATTCTTTTC
TCAGCCGTAGGGTGCTTTAGCTTCTGTCACCGCCGGTAACATGTTGTGAT
AGACAGTGAAATCAGCAGAAGAAAACAAAACGGAGGAGAAAGAGACACAG
AAAGAGATCAGCAGAAATGGCTTTGTGCAGAGTACGCTCAGCTTCATCGA
CGCTCTTCAACAGGCTTCTCTGTCCTTTCGTTCTCAACAACAACACTGCT
TATCGCTATCAGTCCTCTGAAACCGAATTAGTTGGTGATCCTTCAAAACA
AGAAAAACCAAAAAAAGAAACTGTGCGTGATAAGATAATGAGACAGATGG
CTCATGTTGATATAAATTCTCAAATTGGAAGTTGCATGCCACTTGCTTGT
ATGCGTATTGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGG
TGGCAAACTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAAC
CCACTTCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTG
ATTGACACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCA
TGGAGCTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAA
GACTGTGGNTAG
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