FC932502

Overview
NameFC932502
Unique NameFC932502
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932502 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.078e-59
Identity = 107/175 (61.14%), Postives = 131/175 (74.86%), Query Frame = 2 
Query:  149 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 670
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIYVVD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +GD  GN +G GF+LLD E F VKG WE
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGETFEVKGNWE 177
The following BLAST results are available for this feature:
BLAST of FC932502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_XENTR1.078e-5961.14Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionC34209C09EF PostHarveN Citrus clementina cDNA clone C34209C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932502 ID=FC932502; Name=FC932502; organism=Citrus clementina; type=EST; length=740bp
GTGTGATTGCGTTCTTATCAGCCATTCGCTTCCTATCTTGATCTTTCTTC
AAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTTCTTGTAAGAAATGGCA
ACTGATACTGTGGTGGCTGAACACCGGTCGAGCAATAATGGGCATGGTTG
CTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGTCTGGTC
CTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTGGAAGA
GAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCTTCTTC
TTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGTGATGAAC
TACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATTCATCT
GCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCGTATATA
CGTAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATAAAGTTG
TTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCTCACACG
GCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGGAGATAA
GGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCAGAATTCA
ATGTGAAAGGAAGATGGGAAAACCCAGTCACAGTCCTGCTTTTCGTTATG
ATTTCTGGTACCACCTCGACACAAAACATGATCAGCTCAT
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