FC932505
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNFM (30S ribosomal protein S17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsQ PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.357e-14 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 2
Query: 437 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
S K+ VG V+SNKM K+VVV V+RL HH Y+++++R +KF AHD N C +GDRV
Sbjct: 6 SGRKTRVGRVLSNKMDKTVVVVVERLIHHPQYHKFIRRQNKFKAHDAQNACRVGDRV 62 HSP 2 Score: 29.6462 bits (65), Expect = 1.357e-14 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKKHV 702
V ++ SRP+SK K W V ++L K V
Sbjct: 62 VIIEESRPISKDKRWVVVQVLDKAV 86
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_METCA (30S ribosomal protein S17 OS=Methylococcus capsulatus GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.764e-14 Identity = 30/57 (52.63%), Postives = 47/57 (82.46%), Query Frame = 2
Query: 440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVS 610
+++SV G VVSNKM +++VVA++R H +Y +Y++RT+K +AHDENN+C+IGD V+
Sbjct: 7 RVRSVTGRVVSNKMDRTIVVAIERQVSHPLYGKYIRRTTKVLAHDENNECSIGDLVT 63 HSP 2 Score: 25.7942 bits (55), Expect = 1.764e-14 Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKKHV 702
V L SRP+SK K W + I+++ V
Sbjct: 62 VTLHASRPISKKKAWTLGAIVERAV 86
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.764e-14 Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K+ +G+VVS+KM K+VVVAV+ L H +Y + +KRT+KF AHDENN+C +GD+V
Sbjct: 9 KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKV 62 HSP 2 Score: 26.9498 bits (58), Expect = 1.764e-14 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query: 643 SRPLSKHKHWAVAEILKK 696
+RPLSK K W V +IL++
Sbjct: 67 TRPLSKEKRWRVVQILER 84
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ANATD (30S ribosomal protein S17 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.764e-14 Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K+ VG+VVS+KM K+VVVAV+R H +Y + +KRT+KF AHDENN+C +GD+V
Sbjct: 9 KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKV 62 HSP 2 Score: 26.9498 bits (58), Expect = 1.764e-14 Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query: 643 SRPLSKHKHWAVAEILKK 696
+RPLSK K W V +IL++
Sbjct: 67 TRPLSKEKRWRVVQILER 84
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THENN (30S ribosomal protein S17 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rpsQ PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.764e-14 Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K ++G+VVS+KM K+VVVAV+R H +Y +Y+KRT K+ AHDE N+C +GD V
Sbjct: 4 KRMIGVVVSDKMDKTVVVAVERHVQHPLYKKYIKRTKKYHAHDEKNECRVGDVV 57 HSP 2 Score: 29.261 bits (64), Expect = 1.764e-14 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
V ++ +RPLSK K W V +I+K+
Sbjct: 57 VEIEETRPLSKTKRWRVVKIIKR 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THEMA (30S ribosomal protein S17 OS=Thermotoga maritima GN=rpsQ PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.293e-14 Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K + G+VVS+KM K+VVVAV++L H +Y +YVKRT K+ AHDE N+C IGD V
Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHPLYKKYVKRTKKYHAHDERNECKIGDVV 57 HSP 2 Score: 27.335 bits (59), Expect = 2.293e-14 Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
V ++ +RPLSK K W V I+++
Sbjct: 57 VEIEETRPLSKTKRWRVVRIIQR 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.293e-14 Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K +VG+VVS+KM K+V V V+RL H + +YVKRT KF AHDENN C +GD V
Sbjct: 4 KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVV 57 HSP 2 Score: 29.261 bits (64), Expect = 2.293e-14 Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696
V ++ SRPLSK K W V IL++
Sbjct: 57 VEIEESRPLSKLKRWVVVNILER 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNS9 (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9902) GN=rpsQ PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.293e-14 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 2
Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
+K VG VVS+KM+K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRV
Sbjct: 3 VKERVGTVVSDKMEKTVVVAVETRFPHPIYQKTVSRTTRYKAHDEDNSCRVGDRV 57 HSP 2 Score: 31.187 bits (69), Expect = 2.293e-14 Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEIL 690
VR+ +RP+S+ K WA+AE+L
Sbjct: 57 VRITETRPMSRQKRWAIAEVL 77
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_GEOSF (30S ribosomal protein S17 OS=Geobacter sp. (strain FRC-32) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.980e-14 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K+ +G+VVS+KM K+VVV VDRL H VYN+Y+KR++K+ AHD +N C GDRV
Sbjct: 8 KTQIGVVVSDKMDKTVVVKVDRLIKHSVYNKYIKRSAKYKAHDVDNSCKTGDRV 61 HSP 2 Score: 25.0238 bits (53), Expect = 2.980e-14 Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 1
Query: 643 SRPLSKHKHWAVAEILKKH 699
+RP+SK K W V +I++++
Sbjct: 66 TRPMSKDKRWKVRQIIERN 84
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYMTH (30S ribosomal protein S17 OS=Symbiobacterium thermophilum GN=rpsQ PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.980e-14 Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 2
Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
K+ VG+V S+KM K+VVVAV+ L H +Y + V+RT KF AHDE+NQC +GD+V
Sbjct: 9 KTRVGVVTSDKMDKTVVVAVETLVQHPLYKKRVRRTKKFKAHDEHNQCKVGDKV 62 HSP 2 Score: 29.261 bits (64), Expect = 2.980e-14 Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1
Query: 628 VRLDPSRPLSKHKHWAVAEILK 693
VR+ +RPLSK K W V EI++
Sbjct: 62 VRIMETRPLSKEKRWRVVEIIE 83 The following BLAST results are available for this feature:
BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 249
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bpback to top |