FC932505 | Citrus Genome Database

Overview


Name	FC932505
Unique Name	FC932505
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	725

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_KLEP7 (30S ribosomal protein S17 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.503e-14
Identity = 29/56 (51.79%), Postives = 46/56 (82.14%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R+  H VY +++KRT+K   HDENN+C IGD+V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERMVKHPVYGKFIKRTTKLHVHDENNECGIGDKV 59

HSP 2 Score: 25.0238 bits (53), Expect = 8.503e-14
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ROSS1 (30S ribosomal protein S17 OS=Roseiflexus sp. (strain RS-1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 8.503e-14
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 2

Query:  455 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGD--RVSTLMPL 625
            VG VVSNKMQK+VVVAVD L  H +Y + ++RTSKF AHDE  QC IGD  R+    PL
Sbjct:   11 VGRVVSNKMQKTVVVAVDYLKPHPLYRKIIRRTSKFHAHDE-QQCRIGDIVRIGETRPL 68

HSP 2 Score: 31.9574 bits (71), Expect = 8.503e-14
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKH 699
            VR+  +RPLSK K W V EI+K++
Sbjct:   60 VRIGETRPLSKTKRWEVVEIIKRN 83

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_VIBF1 (30S ribosomal protein S17 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.436e-13
Identity = 28/56 (50.00%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+C +GD V
Sbjct:    4 KIRTMQGRVISDKMDKSIVVAIERMVKHPIYGKYIKRTTKLHAHDENNECGLGDTV 59

HSP 2 Score: 24.6386 bits (52), Expect = 1.436e-13
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W +  I++K
Sbjct:   59 VEIRECRPLSKTKSWTLVNIVEK 81

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_VIBCM (30S ribosomal protein S17 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.436e-13
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTV 59

HSP 2 Score: 25.0238 bits (53), Expect = 1.436e-13
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W + +I++K
Sbjct:   59 VEIRECRPLSKTKSWTLVKIVEK 81

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_VIBCH (30S ribosomal protein S17 OS=Vibrio cholerae GN=rpsQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.436e-13
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTV 59

HSP 2 Score: 25.0238 bits (53), Expect = 1.436e-13
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W + +I++K
Sbjct:   59 VEIRECRPLSKTKSWTLVKIVEK 81

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_VIBC3 (30S ribosomal protein S17 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.436e-13
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTV 59

HSP 2 Score: 25.0238 bits (53), Expect = 1.436e-13
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W + +I++K
Sbjct:   59 VEIRECRPLSKTKSWTLVKIVEK 81

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_VIBVY (30S ribosomal protein S17 OS=Vibrio vulnificus (strain YJ016) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.866e-13
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTV 59

HSP 2 Score: 24.6386 bits (52), Expect = 1.866e-13
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W + ++++K
Sbjct:   59 VEIRECRPLSKTKSWTLVKVVEK 81

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_VIBVU (30S ribosomal protein S17 OS=Vibrio vulnificus GN=rpsQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.866e-13
Identity = 30/56 (53.57%), Postives = 45/56 (80.36%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTV 59

HSP 2 Score: 24.6386 bits (52), Expect = 1.866e-13
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W + ++++K
Sbjct:   59 VEIRECRPLSKTKSWTLVKVVEK 81

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_GEOMG (30S ribosomal protein S17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.866e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 2

Query:  446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            K+ VG+VVS+KM K+VVV V  L  H VYN+Y+KR+ K+ AHDE N C  GDRV
Sbjct:    8 KTQVGIVVSDKMDKTVVVQVSHLVKHPVYNKYIKRSVKYKAHDEENSCKSGDRV 61

HSP 2 Score: 25.7942 bits (55), Expect = 1.866e-13
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V++  +RPLSK K W V +I+ +
Sbjct:   61 VQIVETRPLSKDKRWRVRQIIDR 83

[Close]

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHEFN (30S ribosomal protein S17 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.866e-13
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 2

Query:  446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVS 610
            +++ G V+SNKM KS+ VA++R   H +Y +Y+KRT+K  AHDE NQCN GD V+
Sbjct:    6 RTLQGKVISNKMDKSITVAIERQVKHPIYGKYIKRTTKIHAHDETNQCNEGDFVA 60

HSP 2 Score: 27.335 bits (59), Expect = 1.866e-13
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V +   RPLSK K W +AE++ K
Sbjct:   59 VAISQCRPLSKTKSWTLAEVVTK 81

The following BLAST results are available for this feature:

BLAST of FC932505 vs. ExPASy Swiss-Prot

BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249


Match Name	E-value	Identity	Description
RS17_KLEP7	8.503e-14	51.79	30S ribosomal protein S17 OS=Klebsiella pneumoniae...	[more]
RS17_ROSS1	8.503e-14	61.02	30S ribosomal protein S17 OS=Roseiflexus sp. (stra...	[more]
RS17_VIBF1	1.436e-13	50.00	30S ribosomal protein S17 OS=Vibrio fischeri (stra...	[more]
RS17_VIBCM	1.436e-13	53.57	30S ribosomal protein S17 OS=Vibrio cholerae serot...	[more]
RS17_VIBCH	1.436e-13	53.57	30S ribosomal protein S17 OS=Vibrio cholerae GN=rp...	[more]
RS17_VIBC3	1.436e-13	53.57	30S ribosomal protein S17 OS=Vibrio cholerae serot...	[more]
RS17_VIBVY	1.866e-13	53.57	30S ribosomal protein S17 OS=Vibrio vulnificus (st...	[more]
RS17_VIBVU	1.866e-13	53.57	30S ribosomal protein S17 OS=Vibrio vulnificus GN=...	[more]
RS17_GEOMG	1.866e-13	59.26	30S ribosomal protein S17 OS=Geobacter metalliredu...	[more]
RS17_SHEFN	1.866e-13	52.73	30S ribosomal protein S17 OS=Shewanella frigidimar...	[more]

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Properties


Property Name	Value
Genbank description	C34209C12EF PostHarveN Citrus clementina cDNA clone C34209C12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bp
GTATTTTGATTTACGCATTCTTTTTGTTTACCATATTTCATCTTGAAATT
TAAAATCTCTCTGAACTTCCGATAGTAAGCTTTATTTAGCTGGTGAGCTA
CGGCGGTAGGTCCGTTCGCTAGAGCTATCTTAGCAAGTACCAACCTTTTA
GCTTCAAGTTTCTCACCTTAGTCACAAACACAGTCGATGAGTTTAAAGCA
ACAATAAACGAAATCCAATTTCACTCAACTCAGACACTAACCGCCCCCTG
AACCCCTGCCGCCGCCTCACCACAAGTTATTGTCGTGCGCCGTCGACCTC
CGTCAGCATCTGCCGTCACTGTAGTATCACTGTTGAAGCATAGTAATCAG
GTACCATTTTGATTTACTCTCTTATCCATTTTTAACTTTGATTTTTGTTT
CCTCGTGGTCTAAACCCTAGCATCGTCGTCAGGCCGTCACAAATGAAGTC
GGTGGTGGGATTGGTAGTGTCAAACAAGATGCAAAAATCAGTAGTGGTGG
CCGTTGACAGACTCTTTCACCACAAGGTTTACAATCGGTATGTCAAACGA
ACCTCCAAATTCATGGCCCACGACGAGAACAATCAATGCAACATCGGTGA
CCGAGTTAGTACTCTTATGCCTCTTAAGTTAGGTTGGATCCTTCTAGACC
GTTAAGCAAGCATAAGCATTGGGCTGTTGCCGAAATTCTAAAAAAGCACG
TATCTATGTACACCCTCAGCGGATA