FC932505 | Citrus Genome Database

Overview


Name	FC932505
Unique Name	FC932505
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	725

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHISS (30S ribosomal protein S17 OS=Shigella sonnei (strain Ss046) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHIFL (30S ribosomal protein S17 OS=Shigella flexneri GN=rpsQ PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHIF8 (30S ribosomal protein S17 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHIDS (30S ribosomal protein S17 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHIBS (30S ribosomal protein S17 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SHIB3 (30S ribosomal protein S17 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SALTY (30S ribosomal protein S17 OS=Salmonella typhimurium GN=rpsQ PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SALTI (30S ribosomal protein S17 OS=Salmonella typhi GN=rpsQ PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SALSV (30S ribosomal protein S17 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SALPK (30S ribosomal protein S17 OS=Salmonella paratyphi A (strain AKU_12601) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

The following BLAST results are available for this feature:

BLAST of FC932505 vs. ExPASy Swiss-Prot

BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249


Match Name	E-value	Identity	Description
RS17_SHISS	6.916e-13	50.00	30S ribosomal protein S17 OS=Shigella sonnei (stra...	[more]
RS17_SHIFL	6.916e-13	50.00	30S ribosomal protein S17 OS=Shigella flexneri GN=...	[more]
RS17_SHIF8	6.916e-13	50.00	30S ribosomal protein S17 OS=Shigella flexneri ser...	[more]
RS17_SHIDS	6.916e-13	50.00	30S ribosomal protein S17 OS=Shigella dysenteriae ...	[more]
RS17_SHIBS	6.916e-13	50.00	30S ribosomal protein S17 OS=Shigella boydii serot...	[more]
RS17_SHIB3	6.916e-13	50.00	30S ribosomal protein S17 OS=Shigella boydii serot...	[more]
RS17_SALTY	6.916e-13	50.00	30S ribosomal protein S17 OS=Salmonella typhimuriu...	[more]
RS17_SALTI	6.916e-13	50.00	30S ribosomal protein S17 OS=Salmonella typhi GN=r...	[more]
RS17_SALSV	6.916e-13	50.00	30S ribosomal protein S17 OS=Salmonella schwarzeng...	[more]
RS17_SALPK	6.916e-13	50.00	30S ribosomal protein S17 OS=Salmonella paratyphi ...	[more]

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Properties


Property Name	Value
Genbank description	C34209C12EF PostHarveN Citrus clementina cDNA clone C34209C12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bp
GTATTTTGATTTACGCATTCTTTTTGTTTACCATATTTCATCTTGAAATT
TAAAATCTCTCTGAACTTCCGATAGTAAGCTTTATTTAGCTGGTGAGCTA
CGGCGGTAGGTCCGTTCGCTAGAGCTATCTTAGCAAGTACCAACCTTTTA
GCTTCAAGTTTCTCACCTTAGTCACAAACACAGTCGATGAGTTTAAAGCA
ACAATAAACGAAATCCAATTTCACTCAACTCAGACACTAACCGCCCCCTG
AACCCCTGCCGCCGCCTCACCACAAGTTATTGTCGTGCGCCGTCGACCTC
CGTCAGCATCTGCCGTCACTGTAGTATCACTGTTGAAGCATAGTAATCAG
GTACCATTTTGATTTACTCTCTTATCCATTTTTAACTTTGATTTTTGTTT
CCTCGTGGTCTAAACCCTAGCATCGTCGTCAGGCCGTCACAAATGAAGTC
GGTGGTGGGATTGGTAGTGTCAAACAAGATGCAAAAATCAGTAGTGGTGG
CCGTTGACAGACTCTTTCACCACAAGGTTTACAATCGGTATGTCAAACGA
ACCTCCAAATTCATGGCCCACGACGAGAACAATCAATGCAACATCGGTGA
CCGAGTTAGTACTCTTATGCCTCTTAAGTTAGGTTGGATCCTTCTAGACC
GTTAAGCAAGCATAAGCATTGGGCTGTTGCCGAAATTCTAAAAAAGCACG
TATCTATGTACACCCTCAGCGGATA