FC932505 | Citrus Genome Database

Overview


Name	FC932505
Unique Name	FC932505
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	725

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECOL5 (30S ribosomal protein S17 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECOK1 (30S ribosomal protein S17 OS=Escherichia coli O1:K1 / APEC GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECOHS (30S ribosomal protein S17 OS=Escherichia coli O9:H4 (strain HS) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECODH (30S ribosomal protein S17 OS=Escherichia coli (strain K12 / DH10B) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECOBW (30S ribosomal protein S17 OS=Escherichia coli (strain K12 / BW2952) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECO8A (30S ribosomal protein S17 OS=Escherichia coli O8 (strain IAI1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECO81 (30S ribosomal protein S17 OS=Escherichia coli O81 (strain ED1a) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECO7I (30S ribosomal protein S17 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECO5E (30S ribosomal protein S17 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_ECO57 (30S ribosomal protein S17 OS=Escherichia coli O157:H7 GN=rpsQ PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.916e-13
Identity = 28/56 (50.00%), Postives = 44/56 (78.57%), Query Frame = 2

Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVV 59

HSP 2 Score: 25.0238 bits (53), Expect = 6.916e-13
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +   RPLSK K W +  +++K V
Sbjct:   59 VEIRECRPLSKTKSWTLVRVVEKAV 83

The following BLAST results are available for this feature:

BLAST of FC932505 vs. ExPASy Swiss-Prot

BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249


Match Name	E-value	Identity	Description
RS17_ECOL5	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O6:K...	[more]
RS17_ECOK1	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O1:K...	[more]
RS17_ECOHS	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O9:H...	[more]
RS17_ECODH	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli (str...	[more]
RS17_ECOBW	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli (str...	[more]
RS17_ECO8A	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O8 (...	[more]
RS17_ECO81	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O81 ...	[more]
RS17_ECO7I	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O7:K...	[more]
RS17_ECO5E	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O157...	[more]
RS17_ECO57	6.916e-13	50.00	30S ribosomal protein S17 OS=Escherichia coli O157...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34209C12EF PostHarveN Citrus clementina cDNA clone C34209C12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bp
GTATTTTGATTTACGCATTCTTTTTGTTTACCATATTTCATCTTGAAATT
TAAAATCTCTCTGAACTTCCGATAGTAAGCTTTATTTAGCTGGTGAGCTA
CGGCGGTAGGTCCGTTCGCTAGAGCTATCTTAGCAAGTACCAACCTTTTA
GCTTCAAGTTTCTCACCTTAGTCACAAACACAGTCGATGAGTTTAAAGCA
ACAATAAACGAAATCCAATTTCACTCAACTCAGACACTAACCGCCCCCTG
AACCCCTGCCGCCGCCTCACCACAAGTTATTGTCGTGCGCCGTCGACCTC
CGTCAGCATCTGCCGTCACTGTAGTATCACTGTTGAAGCATAGTAATCAG
GTACCATTTTGATTTACTCTCTTATCCATTTTTAACTTTGATTTTTGTTT
CCTCGTGGTCTAAACCCTAGCATCGTCGTCAGGCCGTCACAAATGAAGTC
GGTGGTGGGATTGGTAGTGTCAAACAAGATGCAAAAATCAGTAGTGGTGG
CCGTTGACAGACTCTTTCACCACAAGGTTTACAATCGGTATGTCAAACGA
ACCTCCAAATTCATGGCCCACGACGAGAACAATCAATGCAACATCGGTGA
CCGAGTTAGTACTCTTATGCCTCTTAAGTTAGGTTGGATCCTTCTAGACC
GTTAAGCAAGCATAAGCATTGGGCTGTTGCCGAAATTCTAAAAAAGCACG
TATCTATGTACACCCTCAGCGGATA