FC932506

Overview
NameFC932506
Unique NameFC932506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y719_HAEIN (UPF0076 protein HI0719 OS=Haemophilus influenzae GN=HI0719 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 1
Query:  223 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS----PAPARATYQVAALPLDARVEIECIA 591
            + + + T KAPAA+GPY QA+   NLV  SG + + P TG+  +D +  Q  Q L+N+  I++ +G   + +VKTT+ + DL DF  VN  Y ++F        PAR+  +VA LP D  +EIE IA
Sbjct:    2 MTQIIHTEKAPAAIGPYVQAVDLGNLVLTSGQIPVNPATGEVPADIVA-QARQSLENVKAIIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEVARLPKDVGLEIEAIA 127          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y1466_PASMU (UPF0076 protein PM1466 OS=Pasteurella multocida GN=PM1466 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  223 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS----PAPARATYQVAALPLDARVEIECIA 591
            + + + T+ APAA+GPY QA+   N++  SG + + P+TG+  +D +  Q  Q L+N+  I++ +G   +++VKTT+ + DL DF  VN  Y ++F        PAR+  +VA LP D  +EIE IA
Sbjct:    1 MTKVIHTDNAPAAIGPYVQAVDLGNMLLTSGQIPVNPKTGEVPADIVA-QARQSLENVKAIVEQAGLQVANIVKTTVFVKDLNDFAAVNAEYERFFKENNHPSFPARSCVEVARLPKDVGIEIEAIA 126          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y334_BUCBP (UPF0076 protein bbp_334 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_334 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  241 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECIA 591
            T+K+P  +GPYSQAI+  N  F+SG +         ++  I  QT+ +L+NI  IL+    +  ++VKTTI + +L D   VN++Y K+F       PAR+  +V+ LP +A++EI+ IA
Sbjct:    7 THKSPKPIGPYSQAIQIKNFTFLSGQISQTDN----INTNISFQTQSILQNINYILESKEMNVGNIVKTTIFITNLNDLTIVNDVYQKFFLKYTKTFPARSCVEVSKLPKNAKIEIDAIA 122          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y371_BUCAI (UPF0076 protein BU371 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU371 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  223 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECIA 591
            +   + T  AP  +GPYSQA+K +N + +SG + +   + + + + I +QT  VLKNI  IL  +     +++KTT+   DLK    +NEIY K+F    S  PAR+  +V  LP + ++EIE +A
Sbjct:    1 MNHIIETKDAPKPIGPYSQALKIDNFIILSGQIPIDVISNQ-IPENIAEQTYLVLKNIKLILVHAKFQVHNIIKTTVFTTDLKKINIINEIYKKFFIDNKSNFPARSCVEVQKLPKNVKIEIEAMA 125          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y359_BUCAP (UPF0076 protein BUsg_359 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_359 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  235 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYF---PSPAPARATYQVAALPLDARVEIECIA 591
            V T  AP  +GPYSQAIK  N + +SG + +  ++GK + + I +QT  VLKNI  I+  S      ++K T+   +L+    +NEIY K+F    S  P R+  +V  LP + ++E+E +A
Sbjct:    5 VNTENAPKPIGPYSQAIKNENFLIISGQIPIDVKSGK-IPNNISEQTYIVLKNIKSIIIASKYTIQDIIKITVFTTNLEKIHIINEIYEKFFIDNKSSFPTRSCIEVQKLPKNVKIEMEAMA 125          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: RUTC_ECOLI (UPF0076 protein rutC OS=Escherichia coli (strain K12) GN=rutC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  226 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            K  ++   + A L P+     A+ +V+VSG L          +D  + QT  VL+ I ++++ +G   + V   +I + D K++  +NEIYA++FP   PAR   Q   +  DA VEI  IA
Sbjct:    3 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIA 124          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: RUTC_ECOL6 (UPF0076 protein rutC OS=Escherichia coli O6 GN=rutC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  226 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            K  ++   + A L P+     A+ +V+VSG L          +D  + QT  VL+ I ++++ +G   + V   +I + D K++  +NEIYA++FP   PAR   Q   +  DA VEI  IA
Sbjct:    3 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIA 124          
The following BLAST results are available for this feature:
BLAST of FC932506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y719_HAEIN1.736e-1840.16UPF0076 protein HI0719 OS=Haemophilus influenzae G... [more]
Y1466_PASMU2.962e-1837.80UPF0076 protein PM1466 OS=Pasteurella multocida GN... [more]
Y334_BUCBP2.123e-1637.50UPF0076 protein bbp_334 OS=Buchnera aphidicola sub... [more]
Y371_BUCAI1.797e-1536.51UPF0076 protein BU371 OS=Buchnera aphidicola subsp... [more]
Y359_BUCAP5.228e-1536.89UPF0076 protein BUsg_359 OS=Buchnera aphidicola su... [more]
RUTC_ECOLI8.347e-1331.97UPF0076 protein rutC OS=Escherichia coli (strain K... [more]
RUTC_ECOL68.347e-1331.97UPF0076 protein rutC OS=Escherichia coli O6 GN=rut... [more]

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Properties
Property NameValue
Genbank descriptionC34209D01EF PostHarveN Citrus clementina cDNA clone C34209D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932506 ID=FC932506; Name=FC932506; organism=Citrus clementina; type=EST; length=673bp
GAAAACTGAGAGAGCAACAGCGACAAAGACGAAGACATGGCGTGGTGTTC
ATTACGGTCGTTGAATGTCCCAACCATCGACATGGGCGCACTGCGCACCC
GCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTCGGTCGCCGGGTCC
AGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTCCCTTTGCTTGCTT
ATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTTGTGACTAACAAGG
CTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAAAGCAAATAACCTC
GTTTTTGTCTCTGGGGTTCTTGGTTTAGTTCCAGAGACTGGGAAATTTGT
CTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTTAAAAATATTGGGG
AAATACTGAAAGTTAGCGGCGCTGACTATTCCTCTGTGGTTAAGACAACA
ATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGAATGAGATCTATGC
TAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACATATCAAGTAGCAG
CACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCATTGCAGCCCTTCCC
AATGCTTGATTGGGGTGAAATTCTTCCAGATATCGAATAAAGGGGAAGAA
GCACACTTTGAGACAGGATTTGG
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