FC932518

Overview
NameFC932518
Unique NameFC932518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932518 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.940e-66
Identity = 118/199 (59.30%), Postives = 148/199 (74.37%), Query Frame = 1 
Query:   82 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWEKPGHSPAFGYDFWYHLDTKHDQLI 675
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIYVVD    PRA  LHKV+EP DI  K  L++ HT+HCLASG++++S LGD  GN +G GF+LLD+E F VKG WE+ G +   GYDFWY    +H+ +I
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRALKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDAETFEVKGTWERRGGAAPLGYDFWY--QPRHNVMI 200
The following BLAST results are available for this feature:
BLAST of FC932518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_PONAB7.940e-6659.30Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]

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Properties
Property NameValue
Genbank descriptionC34209E01EF PostHarveN Citrus clementina cDNA clone C34209E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932518 ID=FC932518; Name=FC932518; organism=Citrus clementina; type=EST; length=750bp
GCTGTCTGTGTTTTTTTTCTTGTAGAAATGGCAACTGATACTGTGGTGGC
TGAACACCGGTCGAGCAATAATGGGCATGGTTGCTGCGCGAAAGGGCCTG
GGTATGCAACTCCACTCGATGCCATGTCTGGTCCTAGAGAGAAACTTCTC
TATGTCACTTGTCTTTACACTGGTACTGGAAGAGAGAAGCCTGATTACCT
AGCGACAGTGGATGCGGATCCTAGCTCTTCTTCTTATTCAAAAGTTATTC
ATCGGCTCCCTGTGCCATACATTGGTGATGAACTACATCATTCGGGATGG
AATTCATGTAGCTCATGCTATGGAGATTCATCTGCTCAACGGCGTTTTCT
TGTCTTGCCTTCTTTGGTATCTGGTCGTATATACGTAGTTGACACACAAA
AAAATCCAAGGGCTCCCTCTTTGCATAAAGTTGTTGAGCCTGCAGATATT
GTACAGAAGACAGGATTATCTTATCCTCACACGGCTCATTGCCTTGCTTC
TGGTGATATCCTGGTGTCATGCCTTGGAGATAAGGATGGAAATGCTGAGG
GAAATGGATTTCTTCTCCTTGACTCAGAATTCAATGTGAAAGGAAGATGG
GAAAAACCAGGTCACAGTCCTGCTTTCGGTTATGATTTCTGGTACCACCT
CGACACAAAACATGATCAGCTCATCATGGGGAGCACCCTGGCTTTCACAA
AGGCTTCAACTTCACATGTCTCTGATGGTCTTATGGGAGCATCTGTTGTG
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