FC932523

Overview
NameFC932523
Unique NameFC932523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 3
Query:  258 MAVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ LI  + G     E  +D+YILD AEE G+DLPYSCRAGACSTCAGK+  G +DQSD SFLDD+Q+EAGY+LTC++YP SDC I +H+EEEL
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 65/97 (67.01%), Postives = 82/97 (84.54%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ LI P GE   ++A +D+YILD+A +AG DLP SCRAGACSTCAGK+VSG+VDQS+ SFLDD+Q+EAGY+LTCI+YP SD  I+++KEEEL
Sbjct:    1 MATYKVTLITPDGEV-SYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 3
Query:  258 MAVYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            M  YK+KL   K G + E     DQYILDAAEE G+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD Q++ G++LTC++YPTS+C I +H+EE L
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 62/96 (64.58%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G   EFE  +D+YILD AEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 68/123 (55.28%), Postives = 92/123 (74.80%), Query Frame = 3
Query:  186 TSLGSVTGISKT-FGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            TSL  +  + +  FGLK +   + + MA YK+KLI P G   EF+  ++ YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:   21 TSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 69/132 (52.27%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  186 TSLGSVTGISKTFGLKCSPNFQASM-----------AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            T L S    + +F L+ +P    +M           A Y +KLI P+GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD+Q+  G++LTC++YPTSD VI++HKE++L
Sbjct:    3 TVLSSPRAPAFSFSLRAAPATTVAMTRGASSRLRAQATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ L+   +G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ L+   +G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.102e-31
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            M  +K+ LI   +G     E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+ +G+VDQSD SFLDD+Q++AGY+LTC++YPTSDC I +H+EE+L
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.745e-31
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G++ EF+  +D YILD AEE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of FC932523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNP41.232e-3164.29Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_SYNP21.232e-3167.01Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_CYACA1.232e-3165.31Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_SOLAB1.610e-3164.58Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_CAPAN1.610e-3155.28Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER5_MAIZE1.610e-3152.27Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER1_SYNP61.610e-3164.29Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.610e-3164.29Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER1_PLEBO2.102e-3163.27Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER_COLES2.745e-3163.54Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209E06EF PostHarveN Citrus clementina cDNA clone C34209E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932523 ID=FC932523; Name=FC932523; organism=Citrus clementina; type=EST; length=739bp
GCAACAACACAACGCCAATTCATTTCACTTGACCGCCACCCACCAACCCA
CTCGCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTGGGTAAA
GATGTCGACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCA
GAAATCAACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCT
GTTACGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCA
AGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAG
AGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAG
GAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGAC
GTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCT
TCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA
TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTG
CTGAGTGCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGT
GATCAAGTGCCTGAGTATGNCTGATAGGTTTCTCATGGGCCTACAATATT
TTTTAGATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCAT
TTAGTTATACTATTACTGGCATTTTGGGATTTCATTTCA
back to top