FC932523

Overview
NameFC932523
Unique NameFC932523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD +I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 3
Query:  267 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            +K+KL+ P G + EFE  +D YILD AEE G++LPYSCRAG+CS+CAGKLV G +DQSD SFLDD Q+E G++LTC +YP SD VI++HKEEEL
Sbjct:    2 FKVKLLTPDGPK-EFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEEL 94          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KLI P G   EF+  +D YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:    1 ASYKVKLITPDGPI-EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = 3
Query:  258 MAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YKI L+   +G +  F   ED YILDAAEE G++LPYSCRAGACSTCAGK+  G+VDQ+D SFLDD+Q+ AGY+LTCI+YP+SDC I +H E+EL
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G   EF   +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YK+KL+ P G   EF   +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  261 AVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A YKI L+   +G +   E  +DQYILDAAEE G+DLPYSCRAGACSTCAGKL+ G VDQSD SFLDD+Q++AG++LTC++YPTS+  I +H+EE L
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.964e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC +YP SD VI++HKE++L
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
The following BLAST results are available for this feature:
BLAST of FC932523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_DATIN1.780e-3062.50Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_SCOJA2.324e-3062.50Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_LEUGL2.324e-3064.89Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_CAPAA2.324e-3063.54Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_PORYE3.035e-3064.29Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_DATAR3.035e-3062.50Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_DATST3.964e-3062.50Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU3.964e-3062.50Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER3_CYACA3.964e-3063.92Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_ORYSJ3.964e-3063.54Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209E06EF PostHarveN Citrus clementina cDNA clone C34209E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932523 ID=FC932523; Name=FC932523; organism=Citrus clementina; type=EST; length=739bp
GCAACAACACAACGCCAATTCATTTCACTTGACCGCCACCCACCAACCCA
CTCGCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTGGGTAAA
GATGTCGACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCA
GAAATCAACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCT
GTTACGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCA
AGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAG
AGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAG
GAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGAC
GTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCT
TCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA
TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTG
CTGAGTGCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGT
GATCAAGTGCCTGAGTATGNCTGATAGGTTTCTCATGGGCCTACAATATT
TTTTAGATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCAT
TTAGTTATACTATTACTGGCATTTTGGGATTTCATTTCA
back to top