FC932530

Overview
NameFC932530
Unique NameFC932530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI1_RHIOL (Chitinase 1 OS=Rhizopus oligosporus GN=CHI1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 80/222 (36.04%), Postives = 114/222 (51.35%), Query Frame = 2
Query:   47 TFVSLLVTLSL----IKASQGAGG--IAIYWGQNGNEGTLTST-----CATGKYAYVNIAFLNKFGNGQTPETNLAGHC------NPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLT-AAPQCPFPDRFLGAALNTGLFDYVWVQFYNTH 658
            TF+ + ++  L    ++A+  + G  +  YWGQN   G+ T       C +G+   V ++FL+ F  G TPE NL+  C      N     C  V   IK CQ  G+KV+                  +  A  +WN F GG+S +RP G AV+DG+D DIE G++  +   A F++A   +    +L  AAPQCPFPD  LG+ LN+  FDYV VQFYN +
Sbjct:    5 TFLGMAISAFLASTGVQAAWSSNGPNVMYYWGQNSAGGSNTQASLGTYCESGQVDAVLLSFLHVFNVGGTPEINLSSACAGTYFPNTQLLSCPAVGADIKKCQDKGVKVILSLGGAAGVYGFTSDAQGQQFAQTIWNLFGGGSSDTRPFGDAVIDGVDLDIEGGASTGY---AAFVNALRQKFSSNFLIGAAPQCPFPDAILGSVLNSASFDYVNVQFYNNY 223          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI2_RHIOL (Chitinase 2 OS=Rhizopus oligosporus GN=CHI2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 79/222 (35.59%), Postives = 111/222 (50.00%), Query Frame = 2
Query:   47 TFVSLLVTLSL----IKASQGAGG--IAIYWGQNGNEGTLTST-----CATGKYAYVNIAFLNKFGNGQTPETNLAGHC------NPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLT-AAPQCPFPDRFLGAALNTGLFDYVWVQFYNTH 658
            TF+ + ++  L    ++A+  + G  +  YWGQN   G+ T       C +G+   V ++FL+ F  G  PE NL+  C      N     C  V   IK CQ  G+KV+                  +  A  +WN F GG S +RP G AV+DG+D DIE GS+  +     F++A   +    +L  AAPQCPFPD  LG+ LN+  FDYV VQFYN +
Sbjct:    5 TFLGMAISAFLASTGVQAAWSSHGPNVMYYWGQNSAGGSNTQASLGTYCESGQVDAVLLSFLHVFNVGGIPEINLSSACAGTYFPNTQLLSCPAVGADIKKCQDKGVKVILSLGGAAGVYGFTSDAQGQQFAQTIWNLFGGGNSDTRPFGDAVIDGVDLDIEGGSSTGY---VAFVNALRQKFSSNFLIGAAPQCPFPDAILGSVLNSASFDYVNVQFYNNY 223          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: XIP2_ORYSJ (Xylanase inhibitor protein 2 OS=Oryza sativa subsp. japonica GN=Chib3H-h PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.039e-28
Identity = 82/219 (37.44%), Postives = 114/219 (52.05%), Query Frame = 2
Query:   44 ATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGG--TSSSRPLG-AAVLDGIDFDIEQGSTLHWDDLARFLSAYSS--RGK-KVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNTHLVSIVQEY 682
            A   +LL+  +   A+    G+A+YWG++  EG+L   C TG+Y  V I F N FG+G+    +++GH   A G        IK CQS GI V+                 A +VAD LWN +LGG     +RP G  A +DGIDF I+QG   H+DDLAR L  Y+   RG+  V LTA  +C +PD  L  AL TG+F  + V+ +     ++   Y
Sbjct:   11 AAAAALLLLAAPPPATADDPGLAVYWGRHKEEGSLREACDTGRYTTVIITFYNAFGHGRY-SLDISGHPLAAVGA------DIKHCQSRGITVLLSIGGQGGAYSLPTNASAADVADNLWNAYLGGHRAGVARPFGDDAAVDGIDFFIDQGGADHYDDLARRLDGYNKYYRGRVGVLLTATTRCSYPDHRLEKALATGVFARIHVRMFGDEQCTMSPRY 222          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: XIP1_ORYSJ (Xylanase inhibitor protein 1 OS=Oryza sativa subsp. japonica GN=RIXI PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.915e-27
Identity = 77/194 (39.69%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   86 ASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSS--RPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGK---KVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            A+   G + ++WG+N NEGTL  TC TG Y  V I+F + FG+G+    +L+GH        RV+   IK CQS  I V                  A +VAD +WN  + G      RP G A +DGIDF I+QG+  H+DDLAR L AY+   +    V LTA  +C FPD  +  AL+T LF+ + V+FY+
Sbjct:   29 AAGKTGQMTVFWGRNKNEGTLKETCDTGLYTTVVISFYSVFGHGRY-WGDLSGH------DLRVIGADIKHCQSKNIFVFLSIGGAGKDYSLPTSKSAADVADNIWNAHMDGRRPGVFRPFGDAAVDGIDFFIDQGAPDHYDDLARNLYAYNKMYRARTPVRLTATVRCAFPDPRMKKALDTKLFERIHVRFYD 215          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CONB_CANEN (Concanavalin B OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 78/199 (39.20%), Postives = 101/199 (50.75%), Query Frame = 2
Query:   68 TLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFG-NGQTPETNLAGHCNPAAGG-CRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQG-STLHWDDLARFLSAYSSRGKKVYL-TAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            TLSL   S     IA+YWGQ   +G L  TC T  Y  V I+FL+KFG   + PE  L G C P+ G  C  +   IK CQ  G+KV                  AK++A+YL   FL       PLG   LDGI FDI++    L+WD+L   L       +  +L +AAP C  PD +L  A+ T  FDY++V+FYN
Sbjct:   21 TLSLADISSTE--IAVYWGQR-EDGLLRDTCKTNNYKIVFISFLDKFGCEIRKPELELEGVCGPSVGNPCSFLESQIKECQRMGVKVFLALGGPKGTYSACSADYAKDLAEYLHTYFLSERREG-PLGKVALDGIHFDIQKPVDELNWDNLLEELYQIKDVYQSTFLLSAAPGCLSPDEYLDNAIQTRHFDYIFVRFYN 215          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI1_CANAL (Chitinase 1 OS=Candida albicans GN=CHT1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25
Identity = 70/203 (34.48%), Postives = 98/203 (48.28%), Query Frame = 2
Query:   62 LVTLSLIKASQGAGGIAIYWGQN--GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETN-LAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG-KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNTH 658
            L+ L  I     A  IA YWGQN  G++ TL   C++   + + ++FL+ F N      N  +G  +     C  +   IKSCQ  G  ++                +A   A  LWN F GG  S RP   A++DG DFDIE      +  LA  L  Y S G K  YL+AAPQCP+PD  +G  ++    D+ ++QFYN +
Sbjct:    5 LIILLAISIVASASNIAAYWGQNAGGDQQTLGDYCSSSPASIIILSFLDGFPNLSLNFANQCSGTFSSGLAHCSQIGSDIKSCQQQGKTILLSLGGATGNYGFSSDSEAVQFAGTLWNKFGGGKDSERPFDDAIVDGFDFDIENKDQTGYAALATQLRKYFSTGTKSYYLSAAPQCPYPDESVGDLMSQVDLDFAFIQFYNNY 207          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHIT_YEAST (Endochitinase OS=Saccharomyces cerevisiae GN=CTS1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 67/192 (34.90%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  107 IAIYWGQN--GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGG----CRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSS-RPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG-KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNTH 658
            IA+YWGQN  G + +L + C +       ++FLN+F    T   N A  C+         C  +++ I++CQS G KV+                 A+  A  LW+ F  GT +S RP  +AV+DG DFDIE  + + +  LA  L    + G K+ YL+AAPQCP+PD  +G  L     D+ ++QFYN +
Sbjct:   29 IAVYWGQNSAGTQESLATYCESSDADIFLLSFLNQF---PTLGLNFANACSDTFSDGLLHCTQIAEDIETCQSLGKKVLLSLGGASGSYLFSDDSQAETFAQTLWDTFGEGTGASERPFDSAVVDGFDFDIENNNEVGYSALATKLRTLFAEGTKQYYLSAAPQCPYPDASVGDLLENADIDFAFIQFYNNY 217          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI2_CANAL (Chitinase 2 OS=Candida albicans GN=CHT2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 76/231 (32.90%), Postives = 105/231 (45.45%), Query Frame = 2
Query:   47 TFVSLLVTLSLIKASQGAGG--IAIYWGQNGNEGT--LTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHC-NPAAGG---CRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSR--GKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNTHLVSIVQEYPESYKSFTD 709
            +F SLL    +  ++  +    +A+YWGQNG  G   L   C       V ++FLN F +      N A  C N    G   C  +   IK+CQS G  V+                 A   AD LWN F  G    RP   AV+DG DFDIE G    + +LA  L    ++   K  +L+AAPQCP+PD  LG  L+    D+ ++QFYN +     Q   +++  F D
Sbjct:    3 SFKSLLAAAVVASSALASASNQVALYWGQNGAGGQERLAQYCQETDVDIVLLSFLNLFPDPLN--VNFANQCGNTFESGLLHCSQIGADIKTCQSLGKTVLLSLGGGVGDYGFSDVASATKFADTLWNKFGAGEDPERPFDDAVVDGFDFDIEHGGATGYPELATALRGKFAKDTSKNYFLSAAPQCPYPDASLGDLLSKVPLDFAFIQFYNNYCSINGQFNYDTWSKFAD 231          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: XIP1_WHEAT (Xylanase inhibitor protein 1 OS=Triticum aestivum GN=XIPI PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 72/222 (32.43%), Postives = 111/222 (50.00%), Query Frame = 2
Query:   23 ARNSPAIATFVSLLVTLSLIKASQGAGG----IAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPAAGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSS--RPLGAAVLDGIDFDIEQGSTL-HWDDLARFLSAYSSR---GKKVYLTAAPQCPFPD-RFLGAALNTGLFDYVWVQFYNT 655
            AR    +   +S+   L L   +  AGG    + ++WG+N  EG+L   C +G Y  V ++FL+ FG       +L+GH   + G        IK CQS G+ V                  A ++ D+LWN++ GG+  S  RP G A LDG+D  +E G+    +D LA  L+ ++ R   GK ++LTA  +C +P    +G AL TG+F+ V V+ Y +
Sbjct:    6 ARRPACLLALLSVAAALFLTPTALAAGGKTGQVTVFWGRNKAEGSLREACDSGMYTMVTMSFLDVFGANGKYHLDLSGHDLSSVGA------DIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATGIFERVHVRTYES 221          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI3_CANAL (Chitinase 3 OS=Candida albicans GN=CHT3 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.033e-19
Identity = 69/218 (31.65%), Postives = 104/218 (47.71%), Query Frame = 2
Query:   41 IATFVSLLVTLSLIKASQGAGGIAIYWGQN--GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPA--AGG---CRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGG---TSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSR--GKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNTH 658
            + T  SLL+    I A   +  +A+YWGQN  G++  L+  C +     V ++F+++F +    + N A  C     A G   C+ +++ IK CQ+ G  ++                 AK  A  LW+ F       ++ RP   AVLDG DFDIE   +  +  LA  L     +   K  YL AAPQCP+PD  +G  L     D+V++QFYN +
Sbjct:    4 LLTIFSLLLPALAINARSNSN-VAVYWGQNSGGSQQRLSYYCDSDAVDIVILSFMHQFPS--PIQLNFANACEGTYTANGILQCQTIAEDIKYCQNKGKTILLSLGGAAGSYGFSDDATAKQFAHTLWDLFGNSKNLATNDRPFYDAVLDGFDFDIENNWSTGYPALATELRTLFQKDTSKNYYLGAAPQCPYPDASVGPLLKQSEIDFVFIQFYNNY 218          
The following BLAST results are available for this feature:
BLAST of FC932530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHI1_RHIOL3.202e-2936.04Chitinase 1 OS=Rhizopus oligosporus GN=CHI1 PE=1 S... [more]
CHI2_RHIOL4.624e-2835.59Chitinase 2 OS=Rhizopus oligosporus GN=CHI2 PE=1 S... [more]
XIP2_ORYSJ6.039e-2837.44Xylanase inhibitor protein 2 OS=Oryza sativa subsp... [more]
XIP1_ORYSJ3.915e-2739.69Xylanase inhibitor protein 1 OS=Oryza sativa subsp... [more]
CONB_CANEN1.259e-2539.20Concanavalin B OS=Canavalia ensiformis PE=1 SV=1[more]
CHI1_CANAL2.805e-2534.48Chitinase 1 OS=Candida albicans GN=CHT1 PE=3 SV=2[more]
CHIT_YEAST2.011e-2334.90Endochitinase OS=Saccharomyces cerevisiae GN=CTS1 ... [more]
CHI2_CANAL2.011e-2332.90Chitinase 2 OS=Candida albicans GN=CHT2 PE=3 SV=1[more]
XIP1_WHEAT5.850e-2332.43Xylanase inhibitor protein 1 OS=Triticum aestivum ... [more]
CHI3_CANAL1.033e-1931.65Chitinase 3 OS=Candida albicans GN=CHT3 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34209F01EF PostHarveN Citrus clementina cDNA clone C34209F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932530 ID=FC932530; Name=FC932530; organism=Citrus clementina; type=EST; length=719bp
GACTTGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACAT
TCGTCTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCC
GGCGGCATCGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCAC
TTCAACCTGTGCCACAGGCAAATATGCTTATGTCAACATAGCTTTCCTGA
ACAAGTTTGGCAACGGCCAGACCCCTGAAACTAACCTTGCCGGCCACTGC
AACCCTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTG
TCAGAGCTGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTA
GCTACTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTG
TGGAACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGC
TGTGTTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATT
GGGATGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAA
GTTTACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGG
TGCTGCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACA
ACACCCACCTTGTCAGTATAGTTCAGGAATACCCAGAATCTTATAAGTCA
TTTACAGATGGGCTCATCA
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