FC932530

Overview
NameFC932530
Unique NameFC932530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI2_COCP7 (Endochitinase 2 OS=Coccidioides posadasii (strain C735) GN=CTS2 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 62/222 (27.93%), Postives = 98/222 (44.14%), Query Frame = 2
Query:   53 VSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKF---GNGQTPETNLAGHCNPA------------AGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            VS L   SL         +A+YWGQ   +  L+  C    +  + + F+N F   G    P +N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYN
Sbjct:   13 VSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYN 234          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 62/222 (27.93%), Postives = 98/222 (44.14%), Query Frame = 2
Query:   53 VSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKF---GNGQTPETNLAGHCNPA------------AGGCRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXD--AKNVADYLWNNFLGGT---SSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRG--KKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYN 652
            VS L   SL         +A+YWGQ   +  L+  C    +  + + F+N F   G    P +N    C  +              GC  + + +  C++ G  ++                +  A N AD+LW  F   T   +  RP G A +DG DFDIE+GS   +  + R L     +    + Y++AAPQC  PD++L  A++   FD++++QFYN
Sbjct:   13 VSSLFIQSLALNPYAKSNLAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYN 234          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: CHLY_PARTH (Bifunctional chitinase/lysozyme (Fragment) OS=Parthenocissus quinquefolia PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  101 GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLA 241
            GGIAIYWGQNGNEGTLT TC TGKY+YVNIAFLNKFGNGQTPE NLA
Sbjct:    1 GGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLA 47          
BLAST of FC932530 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 61/216 (28.24%), Postives = 97/216 (44.91%), Query Frame = 2
Query:   56 SLLVTLSLIKASQGAGGIAIYWGQN-------GNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPETNLAGHCNPA---AGG----CRVVSDAIKSCQS*GIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLA-RFLSAYSS-RGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNT 655
            S  + LSL   +Q A  +  YWG N        ++  L+S C    Y  + ++ +  F     P  + +  C+ +   +G     C  +   I+ CQ  GIKV+                D  N A  +WN F  G  S RP G AV+DG D ++ +G+   +   A R L  Y+S   +K Y++AAP C  PD  L  A++   FD++ +  +N+
Sbjct:   13 SARLALSLNLTNQTA--VLGYWGSNLAGKMGDRDQKRLSSYCQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFLSIHTFNS 226          
The following BLAST results are available for this feature:
BLAST of FC932530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHI2_COCP71.761e-1927.93Endochitinase 2 OS=Coccidioides posadasii (strain ... [more]
CHI2_COCIM1.761e-1927.93Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
CHLY_PARTH2.300e-1991.49Bifunctional chitinase/lysozyme (Fragment) OS=Part... [more]
YKT4_SCHPO1.306e-1428.24Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34209F01EF PostHarveN Citrus clementina cDNA clone C34209F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932530 ID=FC932530; Name=FC932530; organism=Citrus clementina; type=EST; length=719bp
GACTTGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACAT
TCGTCTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCC
GGCGGCATCGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCAC
TTCAACCTGTGCCACAGGCAAATATGCTTATGTCAACATAGCTTTCCTGA
ACAAGTTTGGCAACGGCCAGACCCCTGAAACTAACCTTGCCGGCCACTGC
AACCCTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTG
TCAGAGCTGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTA
GCTACTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTG
TGGAACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGC
TGTGTTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATT
GGGATGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAA
GTTTACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGG
TGCTGCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACA
ACACCCACCTTGTCAGTATAGTTCAGGAATACCCAGAATCTTATAAGTCA
TTTACAGATGGGCTCATCA
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