FC932531

Overview
NameFC932531
Unique NameFC932531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_PROMH (Probable phosphoglycerate mutase gpmB OS=Proteus mirabilis (strain HI4320) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WNV  ++QGQ D  L  +G  QA  VAER+ K   I+ I SSDL R  +TA+ IA  C    VI DP LRE  +G L+               ++ + G  D  IP  GES+ +L  R  +AL          R ++V+HG
Sbjct:    3 QVYLVRHGETEWNVARRIQGQSDSPLTAMGVRQAQQVAERV-KSAGITHIISSDLGRTCQTAEIIAQAC-RCDVITDPRLRELDMGVLEQREIATLNTQEEAWRKSLIDGTPDGRIP-QGESMVELANRMQAALNSCLALPEHSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_KLEP7 (Probable phosphoglycerate mutase gpmB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 55/152 (36.18%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G  QA  V ER A+   I+ I +SDL R   TA+ IA  C G  VI D  LRE  +G L+       ++      +  ++G  D  IP  GES+ +L  R  +AL        G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGER-ARTLGITHIITSDLGRTRRTAEIIAEAC-GCSVIADARLRELDMGVLEKRHIDSLSEEEEGWRRQLVNGTPDGRIP-QGESMQELSERMHAALASCLELPAGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_CITK8 (Probable phosphoglycerate mutase gpmB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=gpmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ V ER A+   I+ I SSDL R   TA+ IA  C G  +  D  LRE  +G L+        +      +  ++G  D  IP  GES+ +L  R  +AL        G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVGER-ARTLGITHIVSSDLGRTRRTAEIIAQAC-GCDITFDARLRELDMGVLEKRHIDTLTEEEENWRRQLVNGTVDGRIP-DGESMQELSDRVNAALASCLELPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_KLEP3 (Probable phosphoglycerate mutase gpmB OS=Klebsiella pneumoniae (strain 342) GN=gpmB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 55/152 (36.18%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G  QA  V ER A+   I+ I +SDL R   TA+ IA  C G  VI D  LRE  +G L+       +       +  ++G  D  IP  GES+ +L  R  +AL        G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGER-ARTLGITHIITSDLGRTRRTAEIIAEAC-GCSVIADARLRELDMGVLEKRHIDSLSDEEEGWRRQLVNGTPDGRIP-QGESMQELSERMHAALASCLELPAGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SALPK (Probable phosphoglycerate mutase gpmB OS=Salmonella paratyphi A (strain AKU_12601) GN=gpmB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ V ER A+   I+ I SSDL R   TA+ IA  C G  +  D  LRE  +G L+        +      +  ++G  D  I  GGES+ +L  R  +AL        G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVGER-ARSLGITHIISSDLGRTKRTAEIIAQAC-GCDITFDSRLRELDMGVLEKRQIDSLTEEEEGWRRQLVNGTQDGRIL-GGESMQELSDRVHAALASCLELPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: PMGY_SCHPO (Phosphoglycerate mutase OS=Schizosaccharomyces pombe GN=gpm1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  158 IIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERL-AKEFKISVIYSSDLKRALETAQTIANRCG--GLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHI--GERIVVVTHGGVIRTL 628
            +++ RHGE+ WN      G  D  L+E G ++A    ERL ++ +K  + ++S L+RA +T Q I    G   L+ I+  +L ER+ GDLQGL   +A K    A Q  +  ++    P  GESL     R     +     HI  GE++++  HG  +R L
Sbjct:   10 LVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWG-AEQVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRAL 170          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMA_OCHA4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  158 IIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERL-AKEFKISVIYSSDLKRALETAQTIANRCG--GLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHI--GERIVVVTHGGVIRTLYHGL 640
            +++VRHG++ WN++    G  D  L E G  +A +  +RL A   K  + Y+S L RA  T Q I ++ G   LK I D  L ER  GDL GL  ++ A+      Q  +  ++    P GGESL     R         + H+  GE ++V  HG  +R L   L
Sbjct:    5 LVLVRHGQSEWNLKNLFTGWRDPGLTEQGHAEAKAAGQRLKAAGLKFDIAYTSALSRAQVTCQHILDQLGQSDLKTIRDQALNERDYGDLSGL-NKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTVQPHVLRGETVLVAAHGNSLRALIMAL 169          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMA_UNCTG (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 55/188 (29.26%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKE-FKISVIYSSDLKRALETAQTIANRCGGL--KVIEDPELRERHLGDLQGL---------------VFREAAKVCPIAY----------QAFLSGKTDQDIPGGGESLDQLYRRCTS--ALQRIARKHIGERIVVVTHGGVIRTL 628
            +++++RHGE+ WN + K  G  DV+L+E G E+A+   ++L K+ F   + Y+S LKRA++T   + N    L   V++D  L ERH G LQGL               ++R +  + P+A           +A  SG    +IP   E L     R       + + +   G++I++  HG  +R L
Sbjct:    3 KVVLIRHGESVWNKENKFTGWSDVDLSEKGNEEALKAGKQLKKDGFTFDLAYTSVLKRAIKTLWNVLNTMDLLWTPVVKDWRLNERHYGALQGLNKAETAAKYGEEQVKIWRRSYDIAPMALDENDERYPGKEARYSGLLKGEIP-LAECLKDTVARVVPYWGKEVVPQIKAGKKIIIAAHGNSLRAL 189          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMA_RHILO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Rhizobium loti GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 2
Query:  158 IIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERL-AKEFKISVIYSSDLKRALETAQTIANRCG--GLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHI--GERIVVVTHGGVIRTLYHGL 640
            +++VRHG++ WN++    G  DV+L E G  +A +  ++L A+  K  + ++S L RA +T Q I +  G   LK I D  L ER  GDL GL   +A K      Q  +  ++    P GGESL     R         + H+  G  ++V  HG  +R L   L
Sbjct:    5 LVLVRHGQSEWNLKNLFTGWRDVDLTEQGHAEAKAAGQKLKARGLKFDIAFTSALSRAQKTCQHILDAVGQSDLKTIRDQALNERDYGDLSGLNKDDARKKWG-EEQVHVWRRSYDVSPPGGESLKDTGARVWPYYLHDLQPHVLRGGTVLVAAHGNSLRALIMAL 169          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMA_BRUO2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gpmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  158 IIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERL-AKEFKISVIYSSDLKRALETAQTIANRCG--GLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHI--GERIVVVTHGGVIRTLYHGL 640
            +++VRHG++ WN++    G  D  L E G  +A +  +RL A   K  + Y+S L RA  T Q I +  G  GL+ I D  L ER  GDL GL  ++ A+      Q  +  ++    P GGESL     R         + H+   E ++V  HG  +RTL   L
Sbjct:    5 LVLVRHGQSEWNLKNLFTGWRDPGLTEQGHAEAKAAGQRLKAAGLKFDIAYTSALSRAQVTCQHILDELGQPGLETIRDQALNERDYGDLSGL-NKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVWPYYLHTIQPHVLREETVLVAAHGNSLRTLIMAL 169          
The following BLAST results are available for this feature:
BLAST of FC932531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GPMB_PROMH1.883e-1437.50Probable phosphoglycerate mutase gpmB OS=Proteus m... [more]
GPMB_KLEP71.883e-1436.18Probable phosphoglycerate mutase gpmB OS=Klebsiell... [more]
GPMB_CITK81.883e-1435.53Probable phosphoglycerate mutase gpmB OS=Citrobact... [more]
GPMB_KLEP33.213e-1436.18Probable phosphoglycerate mutase gpmB OS=Klebsiell... [more]
GPMB_SALPK5.480e-1435.53Probable phosphoglycerate mutase gpmB OS=Salmonell... [more]
PMGY_SCHPO2.720e-1332.72Phosphoglycerate mutase OS=Schizosaccharomyces pom... [more]
GPMA_OCHA42.720e-1333.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_UNCTG3.552e-1329.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_RHILO3.552e-1332.532,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRUO24.639e-1333.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC34209F02EF PostHarveN Citrus clementina cDNA clone C34209F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932531 ID=FC932531; Name=FC932531; organism=Citrus clementina; type=EST; length=758bp
GAATAATATTCTTGCATGCGTAAAAATCCCAAAACATTTCTGCGCGGAAT
CGGAACGGATTCAGAGGCACTCAAAACCCGGGAACATGGCCGAGTCAACG
GAGTCTCCAGCAGTCATGAACGGCAGCTCTGCCTCTGTTGGGCCTGATTA
TTGTGAGATCATTGTGGTGCGTCACGGTGAAGCGCCTTGGAACGTTCAAG
GAAAAGTTCAGGGGCAGTTAGATGTTGAATTGAATGAAGTTGGAAGAGAG
CAAGCTGTTTCTGTGGCTGAGCGGCTGGCTAAGGAATTTAAAATTTCTGT
TATCTATTCTTCTGACCTGAAGCGAGCACTCGAAACTGCACAGACAATTG
CAAACAGATGTGGTGGGCTAAAGGTCATTGAAGATCCTGAACTAAGGGAA
AGACATCTTGGAGATCTTCAAGGCCTTGTTTTCCGTGAAGCAGCCAAAGT
CTGTCCTATAGCATATCAAGCATTTTTATCTGGCAAGACAGATCAAGATA
TCCCTGGTGGTGGAGAAAGTCTTGATCAACTTTATCGACGGTGCACGTCT
GCATTGCAGAGAATTGCTAGGAAGCATATAGGAGAGCGAATAGTAGTTGT
GACTCATGGTGGTGTAATCAGAACACTCTACCACGGGCTTGCCCAAACAA
AAGCCTGAAAGGTAGGTCCTGAATCATCTATCACATATTTAGGTGACTGA
AAAAACAGCGGGTCTTAAAACCTGGGGTGATGTAGTCATCTCACAAACAG
ATTCTAAG
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