FC932533

Overview
NameFC932533
Unique NameFC932533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932533_ssr180 microsatellite FC932533_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: HYES_CORS2 (Soluble epoxide hydrolase OS=Corynebacterium sp. (strain C12) PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  199 KIEHTTVATNGINMHVASIGTGPAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKAL 555
            +I H     NG  MH  + G+G  ++ +HG+P+ WY WRN +  L+ + +  IAPDLRG GD++ P  +T +                   +V ++GHDWG  +A+YF     D V+ L
Sbjct:    4 EITHHQAMINGYRMHYVTAGSGYPLVLLHGWPQSWYEWRNVIPALAEQ-FTVIAPDLRGLGDSEKP--MTGFDKRTMATDVRELVSHLGYDKVGVIGHDWGGSVAFYFAYDNRDLVERL 119          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: DHMA1_MYCTU (Haloalkane dehalogenase 1 OS=Mycobacterium tuberculosis GN=dhmA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 39/121 (32.23%), Postives = 55/121 (45.45%), Query Frame = 1
Query:  202 IEHTTVATNGINMHVASIGTG--PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 558
            ++ T   T  + MH    G G  P ++ +HG P   Y +R  +  LS+ G+R +APDL G+G +D P  +  YT L               H V L   DWG+LI         DR+  LV
Sbjct:   24 VDVTAGDTQPLRMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIEDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRIARLV 144          
BLAST of FC932533 vs. ExPASy Swiss-Prot
Match: DHMA1_MYCBO (Haloalkane dehalogenase 1 OS=Mycobacterium bovis GN=dhmA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 39/121 (32.23%), Postives = 55/121 (45.45%), Query Frame = 1
Query:  202 IEHTTVATNGINMHVASIGTG--PAVLFIHGFPELWYSWRNQLLYLSSRGYRAIAPDLRGYGDTDAPPSVTSYTALHXXXXXXXXXXXXXXHQVFLVGHDWGALIAWYFCLFRPDRVKALV 558
            ++ T   T  + MH    G G  P ++ +HG P   Y +R  +  LS+ G+R +APDL G+G +D P  +  YT L               H V L   DWG+LI         DR+  LV
Sbjct:   24 VDVTAGDTQPLRMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIEDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRIARLV 144          
The following BLAST results are available for this feature:
BLAST of FC932533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HYES_CORS21.672e-1433.61Soluble epoxide hydrolase OS=Corynebacterium sp. (... [more]
DHMA1_MYCTU5.034e-1132.23Haloalkane dehalogenase 1 OS=Mycobacterium tubercu... [more]
DHMA1_MYCBO5.034e-1132.23Haloalkane dehalogenase 1 OS=Mycobacterium bovis G... [more]

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Properties
Property NameValue
Genbank descriptionC34209F04EF PostHarveN Citrus clementina cDNA clone C34209F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932533 ID=FC932533; Name=FC932533; organism=Citrus clementina; type=EST; length=707bp
GATGCATGCTCATTTAGTCGGATGACATTTGTCCGTCCTATTCTTCTTAT
CCATTTGATATTTAGCTCAATCATCAACCGGGAGTCCGGCAGGAGCCGTC
CTGTTTCACGTTCCTTTCATTCAACTTAAACAGAGCCTAATCCTGAAACC
TTCAGATTTCAGAGTTGCACCAAAAGGAAAAACAAACAAACAATGGAGAA
AATAGAGCACACAACAGTAGCCACTAACGGCATAAACATGCACGTGGCAT
CAATAGGGACAGGCCCAGCAGTTCTCTTCATTCACGGCTTCCCTGAACTC
TGGTATTCCTGGCGCAACCAGCTCCTCTATCTCTCTTCCCGCGGCTACCG
TGCCATTGCCCCAGACCTTCGTGGATACGGCGACACCGACGCCCCACCCT
CGGTCACGTCGTACACGGCACTCCATCTTGTCGGTGACCTCATCGGCCTC
CTTGATAAATTGGGTATCCATCAAGTTTTCCTAGTGGGTCATGACTGGGG
TGCTTTGATTGCTTGGTATTTTTGTTTGTTTAGGCCGGACAGAGTCAAGG
CCTTAGTCAACATGAGCGTCCCCTTTCCTCCCAGAAACCCGGCTGTGAGA
CCTCTTAATAACTTCAGGGCTGTCTATGGTGATGATTATTATATCTGCAG
ATTTCAGGAACCTGGAGAGATTGAAGAGAGTTTGCTCAGATTGATACTGC
NAGACTT
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