FC932538

Overview
NameFC932538
Unique NameFC932538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932538_ssr451 microsatellite FC932538_ssr451:451..462. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8223 contig Ccv1_Contig8223:85..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO1_HUMAN (Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Homo sapiens GN=FMO1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE----SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG     +E+ + +GG W +T   E              +SLYKS+  N  +E+  +  +PF         D   Y  + + L YL+ +A  F + + ++  T+V +         S +W+V +  ++   E   FDAV+VC G  + P L     PGI+++ G+  HS  Y+ P+ F+D+ V++IG   SG DI
Sbjct:   22 LEEGLEPTCFERSDDLGGLWRFTEHVEEG-----------RASLYKSVVSNSCKEMSCYSDFPFPE-------DYPNYVPNSQFLEYLKMYANHFDLLKHIQFKTKVCSVTKCSDSAVSGQWEVVTMHEEKQ-ESAIFDAVMVCTGFLTNPYLPLDSFPGINAFKGQYFHSRQYKHPDIFKDKRVLVIGMGNSGTDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO3_HUMAN (Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Homo sapiens GN=FMO3 PE=1 SV=5)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG     +EK   +GG W ++   E              +S+YKS+  N  +E+M F  +PF         D   +  + ++  Y+  FA+E  + + ++  T V +         + +W V + ++D   E   FDAV+VC+GH   P L +   PG++ + GK  HS +Y+ P  F  + V+++G   SG DI
Sbjct:   22 LEEGLEPTCFEKSNDIGGLWKFSDHAEEG-----------RASIYKSVFSNSSKEMMCFPDFPFPD-------DFPNFMHNSKIQEYIIAFAKEKNLLKYIQFKTFVSSVNKHPDFATTGQWDVTT-ERDGKKESAVFDAVMVCSGHHVYPNLPKESFPGLNHFKGKCFHSRDYKEPGVFNGKRVLVVGLGNSGCDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO4_RAT (Dimethylaniline monooxygenase [N-oxide-forming] 4 OS=Rattus norvegicus GN=Fmo4 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 53/188 (28.19%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  113 YEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            +E+    GG W +   +E     V           Y+SL  N+ +E+  +  +PF         D   +  HE+   YL+ FA  FG+ + +R  T V +        E+ +W+V + + +   +   FDAV+VC G F  PRL     PGI  + G+ +HS  YRIP+ F+ + ++++G   +G D+
Sbjct:   31 FERSSDFGGLWKFAEASEDGMTRV-----------YRSLVTNVCKEMSCYSDFPF-------HEDYPNFMSHEKFWDYLREFAEHFGLLKYIRFKTTVRSVTKRPDFSETGQWEVVT-ETEGKQDRAVFDAVMVCTGQFLSPRLPLESFPGIHKFKGQILHSQEYRIPDAFRGKRILVVGLGNTGGDV 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO3_RAT (Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Rattus norvegicus GN=Fmo3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 54/197 (27.41%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG     +E+ + VGG W ++  TE              +S+Y+S+  N  +E+M F  +P+         D   +  + ++  Y+ +FA E  + + ++  T V           + KW+V + +K+   E   FDAV++C+GH   P L +   PG++ + GK  HS +Y+ P  ++ + V++IG   SG DI
Sbjct:   22 LEEGLEPTCFERSDDVGGLWKFSDHTEEG-----------RASIYQSVFTNSSKEMMCFPDFPYPD-------DFPNFMHNSKLQEYITSFATEKNLLKYIQFETLVTRINKCPDFSTTGKWEVTT-EKNSKKETAVFDAVMICSGHHVYPHLPKDSFPGLNRFKGKCFHSRDYKEPGTWKGKRVLVIGLGNSGCDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO4_MOUSE (Dimethylaniline monooxygenase [N-oxide-forming] 4 OS=Mus musculus GN=Fmo4 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 57/191 (29.84%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  113 YEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSR---KKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            +E+    GG W + ++T  D +          + +Y+SL  N+ +E+  +  +PF         D   +  HE+   YL+ FA  FG+ + +R  T VL+        E+ +W V +    K+D  V    FDAV+VC G F  P L     PGI  + G+ +HS  YRIP+ F+ + ++++G   +G DI
Sbjct:   31 FERTSDFGGLWKF-ADTSEDGM----------TRVYRSLVTNVCKEMSCYSDFPF-------REDYPNFMSHEKFWDYLREFAEHFGLLRYIRFKTTVLSVTKRPDFSETGQWDVVTETEGKRDRAV----FDAVMVCTGQFLSPHLPLESFPGIHKFKGQILHSQEYRIPDAFRGKRILVVGLGNTGGDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO1_PIG (Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Sus scrofa GN=FMO1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 59/207 (28.50%), Postives = 97/207 (46.86%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE----SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKGT*PDLXKK 688
            L EG     +E+ + +GG W +T   E              +SLYKS+  N  +E+  +  +PF         D   Y  +   L YL+ +A +F + + ++  T+V +    E    + +W V +  +    E   FDAV+VC G  + P L     PGI+++ G+  HS  Y+ P+ F+D+ V+++G   SG DI      L KK
Sbjct:   22 LEEGLEPTCFERSDDLGGLWRFTEHVEEG-----------RASLYKSVVSNSCKEMSCYPDFPFPE-------DYPNYVPNSHFLEYLRMYANQFNLLKCIQFKTKVCSVTKHEDFNTTGQWDVVTLCEGKQ-ESAVFDAVMVCTGFLTNPYLPLDSFPGINTFKGQYFHSRQYKHPDIFKDKSVLVVGMGNSGTDIAVEASHLAKK 209          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO2_CAVPO (Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Cavia porcellus GN=FMO2 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 53/195 (27.18%), Postives = 92/195 (47.18%), Query Frame = 2
Query:   92 EGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            EG     +E+ E +GG W +    E              +S+YKS+  N  +E+  F  +P          D   +  + ++L Y + FA++F + + ++  T VL  +       S +W+V ++  D   +   FDAV+VC+GH  +P   L   PGI+ + G+  HS  Y+ P  F+ + +++IG   S  DI
Sbjct:   24 EGLEPTCFERTEDIGGLWRFKENVEDG-----------RASIYKSVITNTSKEMSCFSDFPMPE-------DFPNFLHNSKLLEYFRLFAKKFDLLKYIQFQTTVLTVKKHPDFSSSGQWEVVTQS-DGKEQSAVFDAVMVCSGHHILPHIPLKSFPGIERFKGQYFHSRQYKHPAGFEGKRILVIGIGNSASDI 199          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO1_SCHPO (Thiol-specific monooxygenase OS=Schizosaccharomyces pombe GN=fmo1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 58/205 (28.29%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  104 VVIYEKGEQVGGSWIYTSETES-------------DPLGVDPNRYPVHSS-LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            V ++E+    GG W YTS   +             +P+ V P   PV+ S LY+ L+ N P ELMG+    F  +  +       +P    +  Y + +A+   +   ++L T+VL+    + + W V  K  K    + ++ FDAV +CNGH+ VP +  + G+D +    PG  +HS  +R P  F  + V+++G  +S  D+
Sbjct:   34 VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIEKKDGS-WVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDL 227          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO5_MOUSE (Dimethylaniline monooxygenase [N-oxide-forming] 5 OS=Mus musculus GN=Fmo5 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 56/197 (28.43%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG   V +E+   +GG W +    E              +S+Y+S+ +N  +E+M F  YP +  +Y        Y  + +VL Y + +A+EF + + ++  T V + +       S +W+V + + +   + + FD V+VC GH +   L     PGI+ + GK  HS +Y+ P  F  + VI+IG   SG D+
Sbjct:   23 LEEGLEPVCFERSGDIGGLWRFQEAPEEG-----------RASIYQSVVINTSKEMMCFSDYP-IPDHYPN------YMHNSQVLEYFRMYAKEFDLLKYIQFKTTVCSVKKQPDFSTSGQWQVVT-ECEGKQQVDVFDGVLVCTGHHTDAHLPLESFPGIEKFKGKYFHSRDYKNPVEFTGKRVIVIGIGNSGGDL 200          
BLAST of FC932538 vs. ExPASy Swiss-Prot
Match: FMO3_MOUSE (Dimethylaniline monooxygenase [N-oxide-forming] 3 OS=Mus musculus GN=Fmo3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 52/197 (26.40%), Postives = 94/197 (47.72%), Query Frame = 2
Query:   86 LREGHTVVIYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDI 658
            L EG     +E+ + VGG W ++   E              +S+Y+S+  N  +E+M F  +P+         D   +  H ++  Y+ +FA+E  + + ++  T V +         + KW+V + K     E   FDA ++C+GH   P + +   PG++ + GK  HS +Y+ P  ++ + V++IG   SG DI
Sbjct:   22 LEEGLEPTCFERSDDVGGLWKFSDHIEEG-----------RASIYQSVFTNSSKEMMCFPDFPYPD-------DFPNFMHHSKLQEYITSFAKEKNLLKYIQFETPVTSINKCPNFSTTGKWEVTTEKHGKK-ETAVFDATMICSGHHIFPHVPKDSFPGLNRFKGKCFHSRDYKEPGIWKGKRVLVIGLGNSGCDI 199          
The following BLAST results are available for this feature:
BLAST of FC932538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
FMO1_HUMAN1.999e-1528.93Dimethylaniline monooxygenase [N-oxide-forming] 1 ... [more]
FMO3_HUMAN2.611e-1527.92Dimethylaniline monooxygenase [N-oxide-forming] 3 ... [more]
FMO4_RAT3.410e-1528.19Dimethylaniline monooxygenase [N-oxide-forming] 4 ... [more]
FMO3_RAT3.410e-1527.41Dimethylaniline monooxygenase [N-oxide-forming] 3 ... [more]
FMO4_MOUSE4.453e-1529.84Dimethylaniline monooxygenase [N-oxide-forming] 4 ... [more]
FMO1_PIG4.453e-1528.50Dimethylaniline monooxygenase [N-oxide-forming] 1 ... [more]
FMO2_CAVPO5.816e-1527.18Dimethylaniline monooxygenase [N-oxide-forming] 2 ... [more]
FMO1_SCHPO7.596e-1528.29Thiol-specific monooxygenase OS=Schizosaccharomyce... [more]
FMO5_MOUSE9.921e-1528.43Dimethylaniline monooxygenase [N-oxide-forming] 5 ... [more]
FMO3_MOUSE1.296e-1426.40Dimethylaniline monooxygenase [N-oxide-forming] 3 ... [more]

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Properties
Property NameValue
Genbank descriptionC34209F09EF PostHarveN Citrus clementina cDNA clone C34209F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932538 ID=FC932538; Name=FC932538; organism=Citrus clementina; type=EST; length=716bp
GAAAGAAACGGCACCTCCACTTATGTTTCGCCATGTGGCAGTGATCGGCG
CCGGCGCCGCTGGACTGGTGGTGGGTCATGAGTTGCTGAGGGAAGGCCAC
ACGGTGGTGATTTACGAGAAAGGAGAGCAAGTGGGTGGCTCTTGGATTTA
CACTTCGGAGACGGAGTCAGACCCGCTTGGTGTCGACCCAAATCGTTACC
CGGTTCATTCGAGCCTCTACAAGTCTCTCAGGGTCAATCTTCCCAGGGAG
TTGATGGGATTTCAAGCTTACCCGTTTGTGGCCCGTAATTATGAAGGGTC
CGTTGACCTGAGAAGGTATCCGGGTCATGAGGAGGTGTTGCGTTATTTAC
AAAATTTTGCCAGAGAGTTTGGTGTCGATCAAGTGGTGAGGCTTCATACT
GAGGTGTTGAATGCACGTTTGGTTGAGAGCAACAAATGGAAAGTTAAGTC
AAGAAAGAAAGATGATGTTGTTGAAGAGGAAACTTTTGATGCTGTGGTCG
TTTGCAATGGGCATTTTTCAGTGCCTCGTCTTGCTCAAGTTCCTGGCATT
GATTCATGGCCAGGGAAGCAAATGCATTCACATAATTATCGGATTCCCAA
TCCATTCCAAGATCAAGTAGTGATTCTGATAGGGCATTACGCTAGTGGAT
TGGATATAAAAGGGACTTAGCCGGATTTGNCAAAGAAGTCACATTGCATC
TCGATCGGTTGCAGAT
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