FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 313.153 bits (801), Expect = 8.764e-85
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE F+A EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  VEEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.145e-84
Identity = 144/218 (66.06%), Postives = 171/218 (78.44%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F ++T   K PA+FR+LDF E +GY +GVV EIIHD GRGAPLA+V FRHP++FK   E F+A EGMYTGQF+Y GK A L VGN+LPL S+PEG V+ NVE   GDRG L R SG+Y  VI HNP+   TR+KLPSG+KK++ +  R M+G VAGGGRT+KP+LKAG A HK+ VKRNSWPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.952e-84
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE FIA EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  +EEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 1.952e-84
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE FIA EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  +EEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.952e-84
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE FIA EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  +EEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.952e-84
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE FIA EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  +EEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 1.952e-84
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE FIA EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  +EEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 311.227 bits (796), Expect = 3.330e-84
Identity = 145/218 (66.51%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE FIA EG++TGQFIY GK A L +GN+LP+ +MPEGT++  +EEK GDRG L R SGNY TVI HNPE  K+RVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 310.842 bits (795), Expect = 4.350e-84
Identity = 144/218 (66.06%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE +GY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE F+A EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  VEEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 310.071 bits (793), Expect = 7.419e-84
Identity = 146/218 (66.97%), Postives = 172/218 (78.90%), Query Frame = 2 
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRG PLAKV FR PY+FK  TE FIA EG++TGQF++ GK A L +GN+LP+  MPEGT+I  +EEK GDRG L R SGNY TVI HNPE  K+RVKLPSGAKKVI +T R +VG+VAGGGR DKP+LKAGRA HK+ VKRN WP+ RGVAMNPV+HP GGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGKKAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFGGGNHQH 218
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_XENTR8.764e-8566.5160S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL81_ARATH1.145e-8466.0660S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_RAT1.952e-8466.5160S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_PONAB1.952e-8466.5160S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]
RL8_MOUSE1.952e-8466.5160S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_HUMAN1.952e-8466.5160S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN1.952e-8466.5160S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DANRE3.330e-8466.5160S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_XENLA4.350e-8466.0660S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_ICTPU7.419e-8466.9760S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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