FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRP1 (50S ribosomal protein L2 OS=Streptococcus pyogenes serotype M1 GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 71/187 (37.97%), Postives = 99/187 (52.94%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + VGN LPLA++P GTV+ N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  +G V    ++   + KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKVGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATIGTVGNEQQSLVNIGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STREM (50S ribosomal protein L2 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 71/187 (37.97%), Postives = 99/187 (52.94%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + +GN LPLA++P GTV+ N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  VG V    ++   + KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKIGNALPLANIPVGTVVHNIELKPGKGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_MYCPU (50S ribosomal protein L2 OS=Mycoplasma pulmonis GN=rplB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 64/209 (30.62%), Postives = 101/209 (48.33%), Query Frame = 2 
Query:   59 RNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +N  +    + T   +  +    +R +DF         +VK I +D  R A ++ V +    K        ++ +G+  GQ I +G+N  + VGN L LA++PEGT I N+E +    G L R++G+Y  ++G         ++L SG  + +    R  +GIV     +   + KAGR +HK        P  RG  MNP+DHPHGGG
Sbjct:   40 KNSGRNNRGVITTRHKGGREKRFYRLVDFKRNKDNIEAIVKTIEYDPNRSANISLVTYLDGEK-----RYILSPKGIKVGQRIVSGENVDIIVGNSLELANIPEGTNIHNIELQPKGGGILARSAGSYAQILGKEESGKYVLIRLKSGEVRKVFAKCRATIGIVGNEEHSLVNIGKAGRNRHK-----GIRPTVRGSVMNPIDHPHGGG 238
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRZT (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRZP (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain P1031) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRZJ (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain JJA) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRR6 (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRPS (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain CGSP14) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRPN (50S ribosomal protein L2 OS=Streptococcus pneumoniae GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
[Close]
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRPJ (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRP12.125e-2237.9750S ribosomal protein L2 OS=Streptococcus pyogenes... [more]
RL2_STREM2.125e-2237.9750S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_MYCPU2.125e-2230.6250S ribosomal protein L2 OS=Mycoplasma pulmonis GN... [more]
RL2_STRZT2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRZP2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRZJ2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRR62.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRPS2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRPN2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRPJ2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
back to top