FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRPI (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRP7 (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain 70585) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRP4 (50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRP2 (50S ribosomal protein L2 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 73/187 (39.04%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GT+I N+E K G  G L R +G    V+G    +GK   V+L SG  ++I  T R  VG+V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDNVEAVVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLG---SEGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_LACSS (50S ribosomal protein L2 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 69/187 (36.90%), Postives = 100/187 (53.48%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF       +  VK I +D  R + +A +Q+    K  +I     A +G+  G  + +G NA + VGN LPLA++P+GT+I N+E K G  G L R++G    ++G   ++GK   V+L SG  ++I  T R  VG V  G      + KAGR K    ++    P  RG  MNP DHPHGGG
Sbjct:   62 YRVIDFKRIKDDIKATVKSIEYDPNRTSNIALIQYPDGIKAYII-----APKGLEVGMIVESGVNADIKVGNALPLANIPDGTLIHNIELKPGKGGQLVRSAGTSAQLLG---KEGKYAIVRLTSGETRMILLTCRATVGTVGNGQHELIKIGKAGR-KRWMGIR----PTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 71/206 (34.47%), Postives = 102/206 (49.51%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R GRG I TA  R       +R +DF     +  G +  I +D  R A + KV +++  K  ++        G+  G  I +G  A +++GN LPL +MP GT I N+E   G  G L R +G    +I    ED    ++LPSG  ++I       +G V      ++   KAG    ++  KR+   + RGVAMNPVDHPHGGG
Sbjct:   44 RNGRG-IITARHRGGGHKRLYRQIDFRRNKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHP-----RGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIA--KEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGGG 236          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 71/206 (34.47%), Postives = 102/206 (49.51%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R GRG I TA  R       +R +DF     +  G +  I +D  R A + KV +++  K  ++        G+  G  I +G  A +++GN LPL +MP GT I N+E   G  G L R +G    +I    ED    ++LPSG  ++I       +G V      ++   KAG    ++  KR+   + RGVAMNPVDHPHGGG
Sbjct:   43 RNGRG-IITARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNGDKMYILHP-----RGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIA--KEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_MYCH7 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 72/207 (34.78%), Postives = 104/207 (50.24%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R  +G I T   +  +   ++R +DF        G+VK I +D  R A +A + +    K        +A + +  GQ I +G  + + VGN LPLA +PEGT + N+E K G    L R++G +  + G + EDGK   +KL SG  + I  T R  +G+V     +   + KAGR +HK        P  RG  MNP DHPHGGG
Sbjct:   44 RNSQGKI-TVRHQGGRHKRKYRLIDFKRNKDDIPGIVKTIEYDPNRSANIALISYIDGEK-----RYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRD-EDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGG 238          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_MYCH2 (50S ribosomal protein L2 OS=Mycoplasma hyopneumoniae (strain 232) GN=rplB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 72/207 (34.78%), Postives = 104/207 (50.24%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R  +G I T   +  +   ++R +DF        G+VK I +D  R A +A + +    K        +A + +  GQ I +G  + + VGN LPLA +PEGT + N+E K G    L R++G +  + G + EDGK   +KL SG  + I  T R  +G+V     +   + KAGR +HK        P  RG  MNP DHPHGGG
Sbjct:   44 RNSQGKI-TVRHQGGRHKRKYRLIDFKRNKDDIPGIVKTIEYDPNRSANIALISYIDGEK-----RYILAPKNLKVGQKISSGPKSDILVGNALPLAKIPEGTFVHNIELKPGAGAKLIRSAGTWAQIQGRD-EDGKYVILKLKSGEYRRILATCRATIGVVGNEENSLVNIGKAGRNRHK-----GIRPTVRGSVMNPNDHPHGGG 238          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRTD (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 73/191 (38.22%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + VGN LPLA++P GTVI N+E K G    L R +G    V+G   ++GK   V+L SG  ++I  T R  +G V   G   + L+  G+A       RN W    P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATIGTV---GNEQQSLINLGKA------GRNRWKGVRPTVRGSVMNPNDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRPI2.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRP72.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRP42.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRP22.775e-2239.0450S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_LACSS2.775e-2236.9050S ribosomal protein L2 OS=Lactobacillus sakei su... [more]
RK2_PINTH2.775e-2234.4750S ribosomal protein L2, chloroplastic OS=Pinus t... [more]
RK2_PICAB2.775e-2234.4750S ribosomal protein L2, chloroplastic OS=Picea a... [more]
RL2_MYCH73.625e-2234.7850S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_MYCH23.625e-2234.7850S ribosomal protein L2 OS=Mycoplasma hyopneumoni... [more]
RL2_STRTD4.734e-2238.2250S ribosomal protein L2 OS=Streptococcus thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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