FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRT2 (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 73/191 (38.22%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + VGN LPLA++P GTVI N+E K G    L R +G    V+G   ++GK   V+L SG  ++I  T R  +G V   G   + L+  G+A       RN W    P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATIGTV---GNEQQSLINLGKA------GRNRWKGVRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRT1 (50S ribosomal protein L2 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 73/191 (38.22%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSW----PKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + VGN LPLA++P GTVI N+E K G    L R +G    V+G   ++GK   V+L SG  ++I  T R  +G V   G   + L+  G+A       RN W    P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKVGNALPLANIPVGTVIHNIELKPGKGAELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATIGTV---GNEQQSLINLGKA------GRNRWKGVRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRSY (50S ribosomal protein L2 OS=Streptococcus suis (strain 05ZYH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 72/187 (38.50%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         +VK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GTV+ N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  VG V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRS2 (50S ribosomal protein L2 OS=Streptococcus suis (strain 98HAH33) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 72/187 (38.50%), Postives = 96/187 (51.34%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         +VK I +D  R A +A V +    K  +I     A +G+  GQ I +G  A + VGN LPLA++P GTV+ N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  VG V         L KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLVDFKRNKDGVEAIVKTIEYDPNRSANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPEADIKVGNALPLANIPVGTVVHNIELKPGRGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQHGLVNLGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STRE4 (50S ribosomal protein L2 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 71/187 (37.97%), Postives = 98/187 (52.41%), Query Frame = 2
Query:  128 FRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +R +DF         VVK I +D  R A +A V +    K  +I     A +G+  GQ I +G +A + VGN LPL ++P GTV+ N+E K G  G L R +G    V+G   ++GK   V+L SG  ++I  T R  VG V    ++   + KAGR++ K        P  RG  MNP DHPHGGG
Sbjct:   62 YRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYII-----APKGLEVGQRIVSGPDADIKVGNALPLVNIPVGTVVHNIELKPGKGGELVRAAGASAQVLG---QEGKYVLVRLQSGEVRMILGTCRATVGTVGNEQQSLVNIGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 65/218 (29.82%), Postives = 108/218 (49.54%), Query Frame = 2
Query:   32 ETVAMGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +T+  G+  +  R   G I T   R       +R +DF         VV+ + +D  R A +A ++++   +  ++     A + M  G  + AG    +  GN++PL +MP GT++ NVE K G  G L R++G Y  ++G + +     ++L SG ++++    RG +G V+     +  + KAGR +          P  RGV MNP+DHPHGGG
Sbjct:   31 KTLTEGKRGKGGRNNTGRI-TVRFRGGGHKQAYRNVDFKRGKTDVPAVVERLEYDPNRTAFIALIKYQDGEQAYIL-----APQRMAVGDTVVAGNYVDVKPGNVMPLGNMPVGTIVHNVEMKIGKGGQLARSAGTYAQIVGRDQD--YVILRLNSGEQRLVHGRCRGAIGAVSNPDHMNTSVGKAGRTRW-----MGRRPHNRGVVMNPIDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 70/207 (33.82%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   71 KGRGS--IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            KGR +  I TA  R       +R +DF     +  G +  I +D  R A + KV +++  K  ++        G+  G  I +G  A +++GN+LPL +MP GT I N+E   G  G L R +G    +I    ED    ++LPSG  ++I       +G V      ++   KAG    ++  KR+   + RGVAMNPVDHPHGGG
Sbjct:   42 KGRNARGIITARHRGGGHKRLYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHP-----RGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIA--KEDRSATLRLPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDHPHGGG 236          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 71/219 (32.42%), Postives = 115/219 (52.51%), Query Frame = 2
Query:   32 ETVAMGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +++  G+     R   G I T + R      ++R +DF       +G+V++I +D  R   LA +     YK   I    +A +GM  G  + AG +A +  GN L L  +P G+ + NVE K G+  A+ R +G Y  ++G    DG+   ++L SG  ++I ++ +  +G+V+     ++ L KAGR++    ++    P  RGVAMNPVDHPHGGG
Sbjct:   31 KSLTSGKKSSGGRNNHGRITTRH-RGGGHKKKYRVIDFKRNRS-GQGIVEKIEYDPNRSGFLALIS----YKEDDIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVG---RDGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRW-LGIR----PTVRGVAMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_DINSH (50S ribosomal protein L2 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 66/206 (32.04%), Postives = 100/206 (48.54%), Query Frame = 2
Query:   68 RKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            R   G I T   R   A   +R +DF        GV+  I +D  R A +A V +    +  ++     A +    G  + A + A +  GN +P + MP GT++ N+E K G  G + R +G Y   +G   + G  +++L SG  ++++      VG V+    +++ L KAGR +HK        P  RGV MNPVDHPHGGG
Sbjct:   43 RNNTGRI-TMRRRGGGAKRLYRIVDFKRRKFDVEGVITRIEYDPNRTAFIALVTYTDGEQAYIL-----APQRTAVGDKVVASQKADIKPGNAMPFSGMPIGTIVHNIELKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRNRHK-----GIRPSVRGVVMNPVDHPHGGG 235          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 70/219 (31.96%), Postives = 115/219 (52.51%), Query Frame = 2
Query:   32 ETVAMGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGK-TRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGG 685
            +++  G+     R   G I T + R      ++R +DF       +G+V++I +D  R   LA +     YK   I    +A +GM  G  + AG +A +  GN L L  +P G+ + NVE K G+  A+ R +G Y  ++G    DG+   ++L SG  ++I ++ +  +G+V+     ++ L KAGR++    ++    P  RG+AMNPVDHPHGGG
Sbjct:   31 KSLTSGKKSSGGRNNHGRITTRH-RGGGHKKKYRVIDFKRNRS-GQGIVEKIEYDPNRSGFLALIS----YKEDDIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVG---RDGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAGRSRW-LGIR----PTVRGIAMNPVDHPHGGG 235          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_STRT24.734e-2238.2250S ribosomal protein L2 OS=Streptococcus thermoph... [more]
RL2_STRT14.734e-2238.2250S ribosomal protein L2 OS=Streptococcus thermoph... [more]
RL2_STRSY4.734e-2238.5050S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRS24.734e-2238.5050S ribosomal protein L2 OS=Streptococcus suis (st... [more]
RL2_STRE44.734e-2237.9750S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_NITWN4.734e-2229.8250S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]
RK2_PINKO4.734e-2233.8250S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RL2_WOLWR6.183e-2232.4250S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_DINSH6.183e-2232.0450S ribosomal protein L2 OS=Dinoroseobacter shibae... [more]
RL2_WOLPM8.075e-2231.9650S ribosomal protein L2 OS=Wolbachia pipientis wM... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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