FC932539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2) HSP 1 Score: 308.531 bits (789), Expect = 2.159e-83 Identity = 142/218 (65.14%), Postives = 170/218 (77.98%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGRVIR QRKG GS+F ++T K PA+FR+LDF E +GY +GVV EIIHD GRGAPLA+V FRHP++FK E F+A EGMYTGQF+Y GK A L VGN+LPL S+PEG VI NVE GDRG R SG+Y VI HNP++ +R+KLPSG+KK++ + R M+G VAGGGRT+KP+LKAG A HK+ VKRN WPK RGVAMNPV+HPHGGG HQH Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2) HSP 1 Score: 305.064 bits (780), Expect = 2.387e-82 Identity = 142/219 (64.84%), Postives = 176/219 (80.37%), Query Frame = 2 Query: 44 MGRVIRNQRKGR-GSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGR+IR QRKG+ GS+F A+T K +FR LD+AE GY +GVVKEIIHD GRGAPLA+V F+ +FK+ + FIA EGM+TGQF++AGK A LT+GNILP+ +PEGT+I NVEEK GD GA+ R SGNY T++ HNP++G TR+KLPSG+KK + + AR M+GIVAGGGR DKP+LKAGRA HK+ VK+N+WPK RGVAMNPV+HPHGGG HQH Sbjct: 1 MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQH 219
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 3.117e-82 Identity = 138/218 (63.30%), Postives = 170/218 (77.98%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGR+IR QRKG GS+F ++T K PA+FR+LDF E +GY +GV+ E+IHD GRGAPLA+V FR+P+++ E F+A EGMYTGQF+Y GK A L VGN+LPL S+PEG V+ NVE K GDRG R SG Y VI HNP++G TR+KLPSG+KK++ + R M+G VAGGGRT+KP+LKAG A HK+ VKRN WPK RGVAMNPV+HPHGGG HQH Sbjct: 1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1) HSP 1 Score: 300.827 bits (769), Expect = 4.501e-81 Identity = 136/218 (62.39%), Postives = 171/218 (78.44%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGR IR QRKG G IF ++ + K ++ R LD+AE HGY +G+VK+IIHD GRGAPLA + FR PYK+K + T +A EGM+TGQFI+ G A + +GNI+P+ ++PEGT I NVE K+GDRG + R SGNY TVI HNP+ KTR++LPSGAKKV+++ R M+G+VAGGGRTDKPLLKAGR+ HK+ KRNSWP+ RGVAMNPV+HPHGGG HQH Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQH 218
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2) HSP 1 Score: 296.59 bits (758), Expect = 8.489e-80 Identity = 140/219 (63.93%), Postives = 167/219 (76.26%), Query Frame = 2 Query: 44 MGRVIRNQRKGR-GSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MGRVIR QRKG GS+F ++T K PA+FR+LD+ E +GY +G+V EIIHD GRGAPLA+V FRHP+++ E F+A EGMYTGQ++Y GK A L VGN+LPL S+PEG VI NVE GDRGAL R SG+Y VI HNPE TRVKLPSG+KK++ + R M+G VAGGGRT+KP LKAG A HK+ KRN WP RGVAMNPV+HPHGGG HQH Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQH 219
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45 Identity = 100/219 (45.66%), Postives = 132/219 (60.27%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ I QR GRG+ F + + PA++ L +G + +++HD GR PLAK+ F +T A EGMY GQ I G +A ++ GNILP+ +PEGT I N+E++ GD G R+SG Y ++G KT+V+LPSG + N AR +G++AGGGR +KPLLKAG A HK+ VK WPK RGVAMN V HPHGGG HQH Sbjct: 1 MGKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTF--LTP---AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGR--AGTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45 Identity = 97/219 (44.29%), Postives = 135/219 (61.64%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ I QR+G+ S +F ++ APA++ LD ++ + + VV++++HD GR PLA+V+ F + A EGMY GQ I G A GNILP+ +PEG + N+E++ GD G R SG Y ++G GKT+V+LPSG + N +R M+G++AGGGR +KPLLKAG A +K++ K WPK RGVAMN HPHGGG HQH Sbjct: 1 MGKRIIPQRRGKASPVFKTPDHIHVAPARYPLLDPSKTY---KAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGR--AGGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45 Identity = 96/219 (43.84%), Postives = 132/219 (60.27%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ + +Q +GRG+ + + T K ++R+ D E G G V +I+HD GR AP+AKV+F + + + EG+ G+ I G +A + GN+LPL +PEG + N+E GD G L R+ G Y V+ H+ GKT VKLPSG KV+ R VG+VAGGGR +KP +KAG+ H + K +WPK RGVAMN VDHP+GGG HQH Sbjct: 1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQH 212
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45 Identity = 97/219 (44.29%), Postives = 132/219 (60.27%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ + +Q +GRG+ + + T K ++R+ D E G G V +I+HD GR AP+AKV+F + + + EG+ G+ I G +A + GN+LPL +PEG + N+E GD G L R+ G Y VI H+ GKT VKLPSG KV+ R VG+VAGGGR +KP +KAG+ H + K +WPK RGVAMN VDHP+GGG HQH Sbjct: 1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQH 212
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45 Identity = 103/220 (46.82%), Postives = 131/220 (59.55%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYT-RGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ +R QR GRG+ + + ++ PA++ L G T RG V E+IHD GR PLA+V +F M A EGMY GQ I G A GNILPL +PEGT + NVE + GD G L R +G+Y V+G KT ++LPSG K + N +R +GI AG GR +KP++KAG A HK+ VK WP+ RGVAMN VDHP GGG HQH Sbjct: 1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS-----GDTLRGKVVELIHDPGRYVPLARVVREDGVEFLMP-----AAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGR--AGAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQH 208 The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bpback to top |