FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.159e-83
Identity = 142/218 (65.14%), Postives = 170/218 (77.98%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG GS+F ++T   K PA+FR+LDF E +GY +GVV EIIHD GRGAPLA+V FRHP++FK   E F+A EGMYTGQF+Y GK A L VGN+LPL S+PEG VI NVE   GDRG   R SG+Y  VI HNP++  +R+KLPSG+KK++ +  R M+G VAGGGRT+KP+LKAG A HK+ VKRN WPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 2.387e-82
Identity = 142/219 (64.84%), Postives = 176/219 (80.37%), Query Frame = 2
Query:   44 MGRVIRNQRKGR-GSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR+IR QRKG+ GS+F A+T   K   +FR LD+AE  GY +GVVKEIIHD GRGAPLA+V F+   +FK+  + FIA EGM+TGQF++AGK A LT+GNILP+  +PEGT+I NVEEK GD GA+ R SGNY T++ HNP++G TR+KLPSG+KK + + AR M+GIVAGGGR DKP+LKAGRA HK+ VK+N+WPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQH 219          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.117e-82
Identity = 138/218 (63.30%), Postives = 170/218 (77.98%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR+IR QRKG GS+F ++T   K PA+FR+LDF E +GY +GV+ E+IHD GRGAPLA+V FR+P+++    E F+A EGMYTGQF+Y GK A L VGN+LPL S+PEG V+ NVE K GDRG   R SG Y  VI HNP++G TR+KLPSG+KK++ +  R M+G VAGGGRT+KP+LKAG A HK+ VKRN WPK RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRLIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEVIHDPGRGAPLARVTFRYPFRYNHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDRGVFARCSGAYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.501e-81
Identity = 136/218 (62.39%), Postives = 171/218 (78.44%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGR IR QRKG G IF ++ +  K  ++ R LD+AE HGY +G+VK+IIHD GRGAPLA + FR PYK+K +  T +A EGM+TGQFI+ G  A + +GNI+P+ ++PEGT I NVE K+GDRG + R SGNY TVI HNP+  KTR++LPSGAKKV+++  R M+G+VAGGGRTDKPLLKAGR+ HK+  KRNSWP+ RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQH 218          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.489e-80
Identity = 140/219 (63.93%), Postives = 167/219 (76.26%), Query Frame = 2
Query:   44 MGRVIRNQRKGR-GSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MGRVIR QRKG  GS+F ++T   K PA+FR+LD+ E +GY +G+V EIIHD GRGAPLA+V FRHP+++    E F+A EGMYTGQ++Y GK A L VGN+LPL S+PEG VI NVE   GDRGAL R SG+Y  VI HNPE   TRVKLPSG+KK++ +  R M+G VAGGGRT+KP LKAG A HK+  KRN WP  RGVAMNPV+HPHGGG HQH
Sbjct:    1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQH 219          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 100/219 (45.66%), Postives = 132/219 (60.27%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I  QR GRG+  F + +     PA++  L         +G + +++HD GR  PLAK+       F  +T    A EGMY GQ I  G +A ++ GNILP+  +PEGT I N+E++ GD G   R+SG Y  ++G      KT+V+LPSG    + N AR  +G++AGGGR +KPLLKAG A HK+ VK   WPK RGVAMN V HPHGGG HQH
Sbjct:    1 MGKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTF--LTP---AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGR--AGTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 97/219 (44.29%), Postives = 135/219 (61.64%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I  QR+G+ S +F     ++ APA++  LD ++ +   + VV++++HD GR  PLA+V+      F +      A EGMY GQ I  G  A    GNILP+  +PEG  + N+E++ GD G   R SG Y  ++G     GKT+V+LPSG    + N +R M+G++AGGGR +KPLLKAG A +K++ K   WPK RGVAMN   HPHGGG HQH
Sbjct:    1 MGKRIIPQRRGKASPVFKTPDHIHVAPARYPLLDPSKTY---KAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGR--AGGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 96/219 (43.84%), Postives = 132/219 (60.27%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + + T   K   ++R+ D  E  G   G V +I+HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R+ G Y  V+ H+   GKT VKLPSG  KV+    R  VG+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VDHP+GGG HQH
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.980e-45
Identity = 97/219 (44.29%), Postives = 132/219 (60.27%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + + T   K   ++R+ D  E  G   G V +I+HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R+ G Y  VI H+   GKT VKLPSG  KV+    R  VG+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VDHP+GGG HQH
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 103/220 (46.82%), Postives = 131/220 (59.55%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYT-RGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ +R QR GRG+  + +   ++  PA++  L      G T RG V E+IHD GR  PLA+V      +F M      A EGMY GQ I  G  A    GNILPL  +PEGT + NVE + GD G L R +G+Y  V+G      KT ++LPSG  K + N +R  +GI AG GR +KP++KAG A HK+ VK   WP+ RGVAMN VDHP GGG HQH
Sbjct:    1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS-----GDTLRGKVVELIHDPGRYVPLARVVREDGVEFLMP-----AAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGR--AGAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDHPFGGGRHQH 208          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL83_ARATH2.159e-8365.1460S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_DICDI2.387e-8264.8460S ribosomal protein L8 OS=Dictyostelium discoide... [more]
RL8_TOBAC3.117e-8263.3060S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL8_CAEEL4.501e-8162.3960S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL82_ARATH8.489e-8063.9360S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL2_STAMF1.787e-4545.6650S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_DESK11.787e-4544.2950S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_METM73.980e-4543.8450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM53.980e-4544.2950S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_AERPE6.789e-4546.8250S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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