FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.158e-44
Identity = 96/219 (43.84%), Postives = 132/219 (60.27%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + + T   K   ++R+ D  E  G   G V +I+HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R+ G Y  VI H+   GKT V+LPSG  KV+    R  VG+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VDHP+GGG HQH
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISHDV--GKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.158e-44
Identity = 95/219 (43.38%), Postives = 132/219 (60.27%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + + +   K   ++R+ D  E  G   G V +I+HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R+ G Y  V+ H+   GKT VKLPSG  KV+    R  VG+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VDHP+GGG HQH
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 93/219 (42.47%), Postives = 131/219 (59.82%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + + +   K   ++R+ D  E  G   G V +++HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R  G Y  V+ H  + GKT VKLPSG  KV+    R  +G+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VDHP+GGG HQH
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANGEE-----RLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 93/219 (42.47%), Postives = 131/219 (59.82%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +Q +GRG+  + + +   K   ++R+ D  E  G   G V +++HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R  G Y  V+ H  + GKT VKLPSG  KV+    R  +G+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VDHP+GGG HQH
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANGEE-----RLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 92/219 (42.01%), Postives = 130/219 (59.36%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +QR+GRGS ++T  +   +  A++R  D  E  G   G + +I+HD GR AP+AKV++    +  ++       EG+  G  I  G +A +  GNILPL ++PEG  + N+E   GD G L R  G Y  ++ H+ E  +T VKLPSG  K + +  R  +G+VAGGGR +KP +KAG+  H    K   WP+ RGVAMN VDHP GGG HQH
Sbjct:    1 MGKRLISQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYETGEEGLLVVP-----EGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTHDGE--RTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 97/218 (44.50%), Postives = 133/218 (61.01%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +  QR+G+GS ++ +   L+ APA++  L         RG V E++HD GR  PLA +   +  +F +      A EGMY GQ I  G +A    GNILP+  +PEGT + N+E + GD G L R  G Y  ++G +    KT ++LPSG  K + N AR  +GIVAG GR +KPLLKAG A +K++ K + WP+ RGVAMN V+HPHGGG HQ
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLTPVTL----RGRVVELVHDPGRWVPLAHIVLENGDEFYIP-----AAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQ 207          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.175e-42
Identity = 94/218 (43.12%), Postives = 125/218 (57.34%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ I  QR+GRG S F + +     P ++  L      GY    V +I+H+ G  AP+AK+   +  +F        A EG+Y GQ +  GK A+   GNI+ L  +PEGT+I NVE++AGD G   R  G Y  VIG  PE+ KT ++LPSG    + +  R  VGIVAGGGR +KP LKAG+  H+   K   +P  RG AM+P  HPHGGG HQ
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQ 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 93/218 (42.66%), Postives = 127/218 (58.26%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ I  QR+GRG S F + +     P ++        +   RG+V EI+H+ G  AP+AK++  +  +F        A EG+Y GQ I  G +A   VGN+LPL  +PEGT++ NVE++ GD G   R+ G Y  VIG  PE+ KT V+LPSG    +    R  +GIVAGGGR +KP +KAG+  H+   K   +P  RG AM+P  HPHGGG HQ
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRY------PPNISGRGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQ 207          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.044e-41
Identity = 92/217 (42.40%), Postives = 129/217 (59.45%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+G+GS  F + +   +   ++  L++ +     RGVV+EI+HD GR AP+A+V+F +      I +  IA EG+  GQ IY G +A + VGN LPLA +PEGT + N+E   GD G   R  G Y  V+   P+  K  V+LPSG  K      R  +G+VAGGGR +KPL+KAG+A +K+  +   WP  RGV MN V+HP GG  H
Sbjct:    1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYTQEKTL-RGVVEEIMHDPGRTAPVARVKFENG-----IEKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPD--KVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 92/217 (42.40%), Postives = 125/217 (57.60%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ I  QR+GRG S F + +     P ++  L+     GY    V EI+H+ G  AP+A+++  +  +F        A EG+Y GQ I  G  AA   GNI+ L  +PEGT++ NVE++AGD G   R  G Y  V+G  PE+ KT ++LPSG    + +  R  VGIVAGGGR +KP LKAG+  H+   K   +P  RG AM+P  HPHGGG H
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEFLNF-----AAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTVRGKAMSPYAHPHGGGSH 208          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METMP1.158e-4443.8450S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM61.158e-4443.3850S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METVS9.803e-4442.4750S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA9.803e-4442.4750S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METJA9.803e-4442.0150S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_HYPBU1.084e-4244.5050S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_PYRAE9.175e-4243.1250S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_PYRCJ1.198e-4142.6650S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_PYRFU2.044e-4142.4050S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_PYRIL5.947e-4142.4050S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
back to top