FC932539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41 Identity = 97/218 (44.50%), Postives = 125/218 (57.34%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANT-RLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694 MG+ +R QR GRG+ N L AP ++ + + + G V E+ HD GR PLA + + F + A EGMYTGQ + G NAA GNILPL ++PEGT I NVE + GD G L R+ G Y ++G + ++LPSG K + AR +GI AG GR +KPLLKAG A +K+ K WP RGVAMN V+HPHGGG HQ Sbjct: 1 MGKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFWIP-----AAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQ 211
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 7.767e-41 Identity = 93/218 (42.66%), Postives = 124/218 (56.88%), Query Frame = 2 Query: 44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694 MG+ I QR+GRG S F + + P ++ L+ GY V E++H+ G AP+A++ +F A EG+Y GQ I G A GNI+ L +PEGT+I NVE++AGD G R+SG Y V+G PE+ KT ++LPSG + R VGIVAGGGR +KP LKAG+ H+ K +P RG AM+P HPHGGG HQ Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQ 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.260e-40 Identity = 90/218 (41.28%), Postives = 126/218 (57.80%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694 MG+ I QR+GRG I F + L APA++ RGV+KEI+H+ GR P++ V+ + +F +I EG+Y GQ I GK A + GN+LPL+ +P+G+++ NVE + GD G + R SG Y V H E K ++LPS +K++ R +G+VAG GR +KP +KAG + WP RGVAMNPV HPHGGG H+ Sbjct: 1 MGKRILVQRRGRGGIQFRSKDHLKIAPARYPQDGM---DNLMRGVIKEILHEPGRHTPISLVELENGQEFY-----YIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSHPHGGGSHK 208
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40 Identity = 90/217 (41.47%), Postives = 128/217 (58.99%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691 MG+ + QR+G+GS F + + + ++ L++ + RGVV+EI+HD GR AP+A+V+F + + + IA EG+ GQ IY G +A + +GN LPLA +PEGT + N+E GD G R G Y V+ E K V+LPSG K R +G+VAGGGR +KPL+KAG+A +K+ + WP RGV MN V+HP GG H Sbjct: 1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTL-RGVVEEIMHDPGRTAPVARVRFENGME-----KLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.855e-40 Identity = 91/217 (41.94%), Postives = 128/217 (58.99%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691 MG+ + QR+G+GS F + + + ++ L++ + RGVV+EI+HD GR AP+A+V+F + + + IA EG+ GQ IY G +A + +GN LPLA +PEGT I N+E GD G R G Y V+ E K V+LPSG K R +G+VAGGGR +KPL+KAG+A +K+ + WP RGV MN V+HP GG H Sbjct: 1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTI-RGVVEEIMHDPGRTAPVARVKFENGME-----KLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40 Identity = 91/217 (41.94%), Postives = 126/217 (58.06%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691 MG+ + QR+G+G+ F A + + ++ L+ + RGVV+EI+HD GR AP+A+V+F K + +A EG+ GQ IY G A + +GN LPLA +PEGT + N+E GD G R G Y V+ E K V+LPSG K K R +G+VAGGGR +KP++KAG+A + + WPK RGV MN V+HPHGG H Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKTL-RGVVEEILHDPGRTAPVARVKFEDGTK-----KLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40 Identity = 89/219 (40.64%), Postives = 128/219 (58.45%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ + +QR+GRG+ + + + K ++R D E+ G +G V +I+HD GR AP+A+V+F + + +A E + + + G A + GN LPL+ +PEGT I N+E + GD G L R+SG Y ++I H+ + K ++LPSG K + R VG+VAGGGR +KP LKAG+ H K RGVAMN VDHPHGGG QH Sbjct: 1 MGKRLISQRRGRGTPTYRSASHRFKGKIKYRAYDSIESEGSLKGKVVDIMHDPGRTAPVARVKFENGEE-----RLILAPEALMLNEEVECGVKARVKPGNSLPLSEIPEGTPIYNIENRPGDGGKLVRSSGTYASLITHDAD--KAVIELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQH 212
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39 Identity = 90/217 (41.47%), Postives = 125/217 (57.60%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691 MG+ + QR+G+G+ F A + + ++ L+ + RGVV+EI+HD GR AP+A+V+F K + IA EG+ GQ IY G A + +GN LPLA +PEGT + ++E GD G R G Y V+ E K V+LPSG K R +G+VAGGGR +KP++KAG+A + + WPK RGV MN V+HPHGG H Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERTL-RGVVEEILHDPGRTAPVARVKFEDGTK-----KLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH 209
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39 Identity = 92/218 (42.20%), Postives = 128/218 (58.72%), Query Frame = 2 Query: 44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697 MG+ I +Q +G+G+ T ++ A + + F+ RG+V++I+HD R AP+A V+ + K + +A EG Y GQ I G A + GN LPLAS+PEG I N+E K G G R SG Y ++ H+ G T V+LPSG K + +G+VAGGGRT+KPL+KAG++ +K+ K WP+ RGVAMN VDHP GGG QH Sbjct: 1 MGKRIISQNRGKGTP-TYRAPSHRYRADIKHIKFSG--DLVRGIVEDIMHDPARTAPVALVRLENGEK-----QYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAHDV--GATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQH 208
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.262e-39 Identity = 90/218 (41.28%), Postives = 126/218 (57.80%), Query Frame = 2 Query: 44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694 MG+ I QR+GRG S F + + + P ++ L A RG V +IIH G AP+AK++ + +F A EG+Y GQ I G+ A+ GN++ L PEGT++ NVE++ GD G R+ G Y V+G PE+ KT V+LPSG + R VG+VAGGGR +KP++KAG+ ++ K +P RG AM+P HPHGGG HQ Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAG-----RGYVVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQ 208 The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bpback to top |