FC932539

Overview
NameFC932539
Unique NameFC932539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 97/218 (44.50%), Postives = 125/218 (57.34%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANT-RLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ +R QR GRG+    N   L  AP ++ + +  +      G V E+ HD GR  PLA +   +   F +      A EGMYTGQ +  G NAA   GNILPL ++PEGT I NVE + GD G L R+ G Y  ++G +       ++LPSG  K +   AR  +GI AG GR +KPLLKAG A +K+  K   WP  RGVAMN V+HPHGGG HQ
Sbjct:    1 MGKRLRVQRHGRGTPQWRNRGHLRVAPGRYPSPEVLKLDETYEGYVVELKHDPGRWVPLAHIVIPNVADFWIP-----AAEGMYTGQKVQIGPNAAPVNGNILPLYAIPEGTQIFNVEIRPGDGGKLARSGGAYAILVGKS--GNSAIIQLPSGKVKQVNAKARATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQ 211          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.767e-41
Identity = 93/218 (42.66%), Postives = 124/218 (56.88%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ I  QR+GRG S F + +     P ++  L+     GY    V E++H+ G  AP+A++      +F        A EG+Y GQ I  G  A    GNI+ L  +PEGT+I NVE++AGD G   R+SG Y  V+G  PE+ KT ++LPSG    +    R  VGIVAGGGR +KP LKAG+  H+   K   +P  RG AM+P  HPHGGG HQ
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQ 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.260e-40
Identity = 90/218 (41.28%), Postives = 126/218 (57.80%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ I  QR+GRG I F +   L  APA++            RGV+KEI+H+ GR  P++ V+  +  +F      +I  EG+Y GQ I  GK A +  GN+LPL+ +P+G+++ NVE + GD G + R SG Y  V  H  E  K  ++LPS  +K++    R  +G+VAG GR +KP +KAG   +        WP  RGVAMNPV HPHGGG H+
Sbjct:    1 MGKRILVQRRGRGGIQFRSKDHLKIAPARYPQDGM---DNLMRGVIKEILHEPGRHTPISLVELENGQEFY-----YIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSHPHGGGSHK 208          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 90/217 (41.47%), Postives = 128/217 (58.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+G+GS  F + +   +   ++  L++ +     RGVV+EI+HD GR AP+A+V+F +  +     +  IA EG+  GQ IY G +A + +GN LPLA +PEGT + N+E   GD G   R  G Y  V+    E  K  V+LPSG  K      R  +G+VAGGGR +KPL+KAG+A +K+  +   WP  RGV MN V+HP GG  H
Sbjct:    1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTL-RGVVEEIMHDPGRTAPVARVRFENGME-----KLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.855e-40
Identity = 91/217 (41.94%), Postives = 128/217 (58.99%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+G+GS  F + +   +   ++  L++ +     RGVV+EI+HD GR AP+A+V+F +  +     +  IA EG+  GQ IY G +A + +GN LPLA +PEGT I N+E   GD G   R  G Y  V+    E  K  V+LPSG  K      R  +G+VAGGGR +KPL+KAG+A +K+  +   WP  RGV MN V+HP GG  H
Sbjct:    1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTI-RGVVEEIMHDPGRTAPVARVKFENGME-----KLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 91/217 (41.94%), Postives = 126/217 (58.06%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+G+G+  F A +   +   ++  L+  +     RGVV+EI+HD GR AP+A+V+F    K     +  +A EG+  GQ IY G  A + +GN LPLA +PEGT + N+E   GD G   R  G Y  V+    E  K  V+LPSG  K  K   R  +G+VAGGGR +KP++KAG+A +    +   WPK RGV MN V+HPHGG  H
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKTL-RGVVEEILHDPGRTAPVARVKFEDGTK-----KLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METTH (50S ribosomal protein L2P OS=Methanobacterium thermoautotrophicum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 89/219 (40.64%), Postives = 128/219 (58.45%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ + +QR+GRG+  + + +   K   ++R  D  E+ G  +G V +I+HD GR AP+A+V+F +  +        +A E +   + +  G  A +  GN LPL+ +PEGT I N+E + GD G L R+SG Y ++I H+ +  K  ++LPSG  K +    R  VG+VAGGGR +KP LKAG+  H    K       RGVAMN VDHPHGGG  QH
Sbjct:    1 MGKRLISQRRGRGTPTYRSASHRFKGKIKYRAYDSIESEGSLKGKVVDIMHDPGRTAPVARVKFENGEE-----RLILAPEALMLNEEVECGVKARVKPGNSLPLSEIPEGTPIYNIENRPGDGGKLVRSSGTYASLITHDAD--KAVIELPSGELKALNPQCRATVGVVAGGGRREKPFLKAGKKYHALRAKGKKSVTVRGVAMNAVDHPHGGGNRQH 212          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 90/217 (41.47%), Postives = 125/217 (57.60%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYH 691
            MG+ +  QR+G+G+  F A +   +   ++  L+  +     RGVV+EI+HD GR AP+A+V+F    K     +  IA EG+  GQ IY G  A + +GN LPLA +PEGT + ++E   GD G   R  G Y  V+    E  K  V+LPSG  K      R  +G+VAGGGR +KP++KAG+A +    +   WPK RGV MN V+HPHGG  H
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERTL-RGVVEEILHDPGRTAPVARVKFEDGTK-----KLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH 209          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 92/218 (42.20%), Postives = 128/218 (58.72%), Query Frame = 2
Query:   44 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQH 697
            MG+ I +Q +G+G+  T     ++  A  + + F+      RG+V++I+HD  R AP+A V+  +  K     +  +A EG Y GQ I  G  A +  GN LPLAS+PEG  I N+E K G  G   R SG Y  ++ H+   G T V+LPSG  K +       +G+VAGGGRT+KPL+KAG++ +K+  K   WP+ RGVAMN VDHP GGG  QH
Sbjct:    1 MGKRIISQNRGKGTP-TYRAPSHRYRADIKHIKFSG--DLVRGIVEDIMHDPARTAPVALVRLENGEK-----QYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAHDV--GATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDHPFGGGGRQH 208          
BLAST of FC932539 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.262e-39
Identity = 90/218 (41.28%), Postives = 126/218 (57.80%), Query Frame = 2
Query:   44 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDHPHGGGYHQ 694
            MG+ I  QR+GRG S F + +   + P ++  L  A      RG V +IIH  G  AP+AK++  +  +F        A EG+Y GQ I  G+ A+   GN++ L   PEGT++ NVE++ GD G   R+ G Y  V+G  PE+ KT V+LPSG    +    R  VG+VAGGGR +KP++KAG+  ++   K   +P  RG AM+P  HPHGGG HQ
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAG-----RGYVVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQ 208          
The following BLAST results are available for this feature:
BLAST of FC932539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_IGNH45.947e-4144.5050S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]
RL2_PYRAR7.767e-4142.6650S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]
RL2_KORCO2.260e-4041.2850S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_PYRAB2.952e-4041.4750S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_PYRHO3.855e-4041.9450S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_THEGJ5.035e-4041.9450S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_METTH6.575e-4040.6450S ribosomal protein L2P OS=Methanobacterium ther... [more]
RL2_PYRKO1.122e-3941.4750S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_METTP3.263e-3942.2050S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_THENV4.262e-3941.2850S ribosomal protein L2P OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionC34209F10EF PostHarveN Citrus clementina cDNA clone C34209F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932539 ID=FC932539; Name=FC932539; organism=Citrus clementina; type=EST; length=699bp
GAACTCGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTC
GTGTCATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAAC
ACCCGCCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGA
GGCTCACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCG
GCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTC
AAGATGATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCA
GTTCATCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTC
CTCTCGCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAG
GCTGGTGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGT
TATTGGCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCG
GTGCCAAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTT
GCCGGTGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAA
GCACAAGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTG
CCATGAACCCCGTCGATCACCCTCACGGTGGTGGNTACCACCAGCACAT
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